Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1877 ATGGTTGTGCTTTCTCCTTCTCCAACTTCCATCAAGACAAGCTACAAGAAAAAAAAGACAATGAAAATTCCAACGATAGACCTATCCATGGAAAGGACAGAGTTGTCGGAAACAGTGGTGAAAGCCTGCGAGGAATACGGTTTCTTCAAGGTGATTAACCACAATGTTCCGAAGGAGGTTATTGCAAGAATGGAAGAGGAGGGTGCAGAGTTTTTCGCCAAACCCACCCACGAGAAGCGTCGAGCTGGCCCAGCAAGTCCTTTCGGTTATGGCTTCACCAATATCGGGCCCAACGGAGATAAGGGTGACCTAGAGTATCTCTTGCTTCATGCCAACCCTCTTTCCGTCTCTCAGAGATCCAAAACCATCGCTAGTGACTCCACCAAGTTCAGTTGTGTTGTGAATGATTATGTAGAAGCAGTGAAAGAAGTAACGTGTGAGATTTTAGATCTGGTGCTTGAGGGATTAGGAGTCCCAGAGAAGTTTGCACTAAGCAAGCTCATTAGGGATGTTAATAGTGATTGTGTTCTAAGGATCAATCACTACCCTCCATTGAACCAGAAGTTGAAGGGCAACAAGAATAGCATTGGTTTTGGGGCGCATTCTGACCCTCAGATCTTGACAATCATGCGTTCCAATGACGTGGGTGGGCTTCAAATTTACACCCGTGAAGGGTTGTGGATTCCTATCCCTCCTGACCCCAATCAATTCTTTGTCATGGTGGGCGATGTCTTCCAGGTTTTGACAAATGGAAAGTTCATGAGTGTGAGGCACAGGGCATTAACCAACACATTGGGGGCAAGGATGTCAATGATGTACTTTGCAGCACCACCACTTGATTGGTGGATCACTCCGCTAGCCAAGATGGTGTCACCACCACAAAATCCAAGTCTATATAAGCCCTTCACATGGGACCACTACAAGAAGGCAACATATTCCTTACGCCTCGGAGATTCTCGACTTGATCTCTTCTTGGCCCAGCTAGATACCCATCATCTATCTGTCTCTCCATCACAAATTCAATGTTAA 1029 0.4587 MVVLSPSPTSIKTSYKKKKTMKIPTIDLSMERTELSETVVKACEEYGFFKVINHNVPKEVIARMEEEGAEFFAKPTHEKRRAGPASPFGYGFTNIGPNGDKGDLEYLLLHANPLSVSQRSKTIASDSTKFSCVVNDYVEAVKEVTCEILDLVLEGLGVPEKFALSKLIRDVNSDCVLRINHYPPLNQKLKGNKNSIGFGAHSDPQILTIMRSNDVGGLQIYTREGLWIPIPPDPNQFFVMVGDVFQVLTNGKFMSVRHRALTNTLGARMSMMYFAAPPLDWWITPLAKMVSPPQNPSLYKPFTWDHYKKATYSLRLGDSRLDLFLAQLDTHHLSVSPSQIQC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1877 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 172 277 IPR005123 -
Gso3g1877 342 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 6 327 - -
Gso3g1877 342 SUPERFAMILY Clavaminate synthase-like 11 318 - -
Gso3g1877 342 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 6 327 - -
Gso3g1877 342 Pfam 2OG-Fe(II) oxygenase superfamily 174 276 IPR044861 -
Gso3g1877 342 Gene3D - 4 315 IPR027443 -
Gso3g1877 342 Pfam non-haem dioxygenase in morphine synthesis N-terminal 23 99 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1877 Gso-Chr3 44332177 44337014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1877 21 324 Glycosyltransferase AT5G59530 27.848 4.25e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1877 K04125 - gmx:100796690 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1841 19 47118212 47124083 Gso3g1877 3 44332177 44337014 GST
Gso3g1877 3 44332177 44337014 Gso2g0089 2 958226 962571 PCT
Gso3g1877 3 44332177 44337014 Gso10g0095 10 1013683 1017956 PCT
Gso2g0089 2 958226 962571 Gso3g1877 3 44332177 44337014 PCT
Gso10g0095 10 1013683 1017956 Gso3g1877 3 44332177 44337014 PCT