Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1848 ATGGCCACACCCATTCTATATAACGTTCCCTCCCTTGGCCACCACCCTCGCTCACATTTATTATTTCCGTCTTTGCCCCAAATGTCTTCAACCTTCTCACCCCTCCTCAATCTCATTGCAGTCTTCCTCCTCCTCTTCTTGGTCCGGCACACGTGCGAGGCACGTGACCCGTTCGCGTGCGACCCGAAAAATGGCGCCACGGAGAACATGCCGTTTTGCAAGGCTTCACTGGCGATACCAGAGAGGGTGAAGGATCTGGTTGGAAGGTTGACGCTGCAAGAGAAGGTTAGGCTTCTGGTGAACAATGCCGCGGCGGTTCCAAGGCTTGGGATGAAAGGGTACGAGTGGTGGTCGGAGGCACTCCACGGAGTTTCAAATGTGGGTCCCGGAGTTAAGTTTAATGCACAGTTTCCCGGTGCTACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAATGCTTCTCTCTGGGAGGCAATCGGACAGGTAGTGTCGGATGAGGCAAGGGCCATGTACAACGGTGGAACAGCAGGGCTCACGTATTGGAGCCCAAACGTGAACATTTTCAGGGACCCAAGGTGGGGCCGTGGACAGGAAACTCCCGGTGAGGACCCAGTGTTAGCCGGTACATATGCTGCTAGTTACGTCAGGGGACTACAGGGAACGGACGGTAACCGGTTGAAGGTTGCTGCTTGTTGCAAACACTTCACGGCTTATGACCTCGATAATTGGAATGGCATGGATCGATTCCACTTCAATGCACAAGTGAGTAAGCAGGACATAGAGGAAACATTCGACGTGCCATTCAGGATGTGTGTGAGCGAAGGGAAAGTAGCCAGTGTCATGTGTTCTTACAATCAAGTCAATGGGGTCCCTACCTGTGCCGACCCCAACCTCCTCAAGAAAACAGTTCGTGGCCTGTGGCAACTTGATGGGTACATAGTATCAGACTGTGATTCTGTTGGGGTGTTTTATGATAACCAACATTACACACCAACGCCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGTTTGGATTTAGACTGTGGGCCTTTCCTAGCTGTGCACACGCAGAATGCGGTCGAAAAAGGGTTGCTTAGCGAAGCTGATGTGAACGGTGCTTTGGTGAATACACTGACGGTCCAAATGAGGTTAGGCATGTTTGATGGAGAGCCATCGGCCCATGCATATGGCAAATTGGGCCCAAAAGATGTGTGCAAACCGGCCCATCAAGAACTCGCCCTTGAAGCTGCCAGACAAGGAATTGTGCTTCTTAAGAACACTGGTCCTGTTTTGCCACTCTCCCCACAGCGTCACCATACCGTGGCTGTCATTGGACCCAATTCTAAAGCCACCGTTACAATGATTGGAAATTATGCTGGTGTTGCATGTGGATACACCAATCCCTTACAAGGGATAGGAAGATATGCCAAGACTATTCATCAGTTGGGCTGTGAAAATGTAGCTTGTAAAAATGACAAGTTGTTTGGGTCTGCTATAAACGCGGCCCGTCAAGCAGATGCAACGGTTTTGGTGATGGGCCTGGACCAGTCCATTGAAGCTGAAACGGTGGACAGGACTGGCTTGCTTTTGCCTGGTCGTCAACAAGACCTTGTTTCAAAAGTGGCAGCTGCCTCAAAGGGACCAACTATTTTGGTCATAATGTCTGGTGGTTCTGTGGATATAACTTTTGCAAAGAATAACCCTCGAATTGTGGGCATCCTGTGGGCTGGTTATCCAGGCCAAGCTGGTGGTGCTGCCATTGCAGATATCCTGTTTGGAACAACTAACCCAGGGGGCAAGCTGCCGGTGACATGGTACCCACAAGAATACCTAACAAAGTTGCCAATGACAAACATGGCAATGCGAGGAAGCAAATCAGCAGGGTACCCAGGAAGAACGTATCGGTTCTACAATGGTCCAGTGGTGTATCCATTTGGACACGGCTTGACATACACACACTTTGTTCATACATTAGCGAGTGCTCCCACAGTGGTGTCAGTTCCCTTGAATGGTCACCGCCGTGCCAATGTCACCAATATTTCAAACAGGGCAATTAGAGTGACACATGCACGGTGTGACAAACTCTCCATCAGCCTCGAAGTAGACATTAAAAATGTGGGGTCCAGAGATGGCACGCACACGTTGCTAGTTTTCTCTGCTCCTCCTGCAGGTTTTGGCCATTGGGCACTAGAGAAGCAACTTGTGGCCTTTGAGAAAATCCATGTTCCTGCGAAGGGTCTACAGAGAGTTGGAGTCAATATTCACGTGTGCAAGCTTTTAAGTGTGGTGGATAAGTCTGGGATTAGGAGAATCCCGTTGGGGGAACACAGTTTTAACATTGGCGATGTTAAACACTCCGTGTCACTTCAGGCTGCAGCACTTGGGATTATCAAGTCCTGA 2409 0.4998 MATPILYNVPSLGHHPRSHLLFPSLPQMSSTFSPLLNLIAVFLLLFLVRHTCEARDPFACDPKNGATENMPFCKASLAIPERVKDLVGRLTLQEKVRLLVNNAAAVPRLGMKGYEWWSEALHGVSNVGPGVKFNAQFPGATSFPQVITTAASFNASLWEAIGQVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGTYAASYVRGLQGTDGNRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDIEETFDVPFRMCVSEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGLWQLDGYIVSDCDSVGVFYDNQHYTPTPEEAAADAIKAGLDLDCGPFLAVHTQNAVEKGLLSEADVNGALVNTLTVQMRLGMFDGEPSAHAYGKLGPKDVCKPAHQELALEAARQGIVLLKNTGPVLPLSPQRHHTVAVIGPNSKATVTMIGNYAGVACGYTNPLQGIGRYAKTIHQLGCENVACKNDKLFGSAINAARQADATVLVMGLDQSIEAETVDRTGLLLPGRQQDLVSKVAAASKGPTILVIMSGGSVDITFAKNNPRIVGILWAGYPGQAGGAAIADILFGTTNPGGKLPVTWYPQEYLTKLPMTNMAMRGSKSAGYPGRTYRFYNGPVVYPFGHGLTYTHFVHTLASAPTVVSVPLNGHRRANVTNISNRAIRVTHARCDKLSISLEVDIKNVGSRDGTHTLLVFSAPPAGFGHWALEKQLVAFEKIHVPAKGLQRVGVNIHVCKLLSVVDKSGIRRIPLGEHSFNIGDVKHSVSLQAAALGIIKS* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1848 802 Gene3D - 410 655 IPR036881 GO:0004553|GO:0005975
Gso3g1848 802 Gene3D - 82 399 IPR036962 GO:0004553|GO:0005975
Gso3g1848 802 Pfam Glycosyl hydrolase family 3 N terminal domain 137 379 IPR001764 GO:0004553|GO:0005975
Gso3g1848 802 PRINTS Glycosyl hydrolase family 3 signature 143 162 IPR001764 GO:0004553|GO:0005975
Gso3g1848 802 PRINTS Glycosyl hydrolase family 3 signature 230 246 IPR001764 GO:0004553|GO:0005975
Gso3g1848 802 PRINTS Glycosyl hydrolase family 3 signature 304 322 IPR001764 GO:0004553|GO:0005975
Gso3g1848 802 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 424 657 IPR036881 GO:0004553|GO:0005975
Gso3g1848 802 PANTHER SUGAR HYDROLASE-RELATED 35 797 IPR044993 GO:0009044|GO:0045493
Gso3g1848 802 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 35 797 - -
Gso3g1848 802 Pfam Glycosyl hydrolase family 3 C-terminal domain 424 654 IPR002772 GO:0004553|GO:0005975
Gso3g1848 802 SMART Fn3_like_2 716 787 IPR026891 -
Gso3g1848 802 SUPERFAMILY (Trans)glycosidases 70 423 IPR017853 -
Gso3g1848 802 Gene3D Immunoglobulins 678 798 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1848 Gso-Chr3 44094684 44102868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1848 43 802 Glycoside Hydrolase AT1G02640 71.822 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1848 - - gmx:100789316 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1812 19 46858509 46864957 Gso3g1848 3 44094684 44102868 GST
Gso3g1848 3 44094684 44102868 Gso2g0116 2 1194894 1199440 PCT
Gso3g1848 3 44094684 44102868 Gso10g0122 10 1279800 1285969 PCT
Gso2g0116 2 1194894 1199440 Gso3g1848 3 44094684 44102868 PCT
Gso10g0122 10 1279800 1285969 Gso3g1848 3 44094684 44102868 PCT