Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1812 ATGTCTTCCAGCTTCTCACCCCTTGCCATCTTCCTCCTCCTCCTTCTGGTCCGGTACACGTGCGAGGCACGTGAGCCGTTCGCGTGCGACCCAAAAAATGGCGGCACGAAGAAGATGGCGTTTTGCAAGGTTTCGCTGGCGATAGCGGAGAGGGTGAAGGATCTGATTGGAAGGTTGACGCTGGAAGAGAAGGTAAGGCTTCTAGTGAACAATGCCGCGGCAGTTCCGAGGCTTGGGATGAAAGGGTACGAGTGGTGGTCTGAGGCACTCCATGGTGTTTCAAATCTGGGTCCCGCCGTTAAGTTTAACGCACAGTTTCCTGCCGCTACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAATGCTTCTCTCTGGGAGGCAATCGGACAGGTAGTGTCGGATGAGGCCAGGGCCATGTACAACGGTGGAACAGCAGGGCTCACGTATTGGAGCCCAAACGTTAACATTTTCAGGGACCCTAGGTGGGGCCGTGGACAGGAAACTCCCGGTGAGGACCCTGTGTTGGCCGGTACTTATGCTGCTACTTATGTCAGGGGGCTACAGGGAACCCACGCTAACCGGTTGAAGGTTGCTGCTTGTTGCAAACATTTCACTGCTTATGATCTTGATAATTGGAACGGCATGGATCGATTCCACTTTAATGCACAGGTGAGTAAGCAGGACATAGAGGATACATTCGACGTGCCATTCAAGATGTGTGTGAGCGAAGGCAAAGTAGCCAGTGTCATGTGTTCTTATAATCAAGTCAATGGGGTCCCTACCTGTGCTGACCCCAACCTCCTCAAGAAAACTGTTCGTGGCCTGTGGCAACTTGACGGGTACATTGTATCAGACTGTGATTCTGTTGGGGTGTTTTATGATAACCAACATTACACACCAACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTAGACTGTGGGCCTTTCCTAGCTGTGCACACGCAGAATGCGGTCAAAAAAGGCTTGCTAAGCGAAGCTGATGTCAATGGTGCTTTGGTGAATACACTGACGGTCCAAATGAGGTTAGGGATGTTTGATGGAGAGCCCACGGCCCATCCATATGGTCACTTGGGCCCAAAAGATGTGTGCAAACCGGCCCACCAAGAACTGGCTCTTGAAGCTGCCAGACAAGGAATTGTACTTCTTAAGAACACTGGTCCTGTTTTGCCACTCTCCTCACAGCTTCATCGCACCGTGGCTGTCATCGGGCCCAATTCTAAAGCTACTATTACAATGATTGGAAATTATGCTGGTGTTGCTTGTGGATACACCAACCCCTTACAAGGGATAGGAAGATATGCACGGACTGTTCATCAGTTGGGTTGTCAAAATGTAGCCTGTAAAAATGACAAGCTGTTTGGACCTGCTATAAATGCGGCCCGTCAAGCAGATGCAACGGTTTTGGTTATGGGCTTGGACCAGTCCATTGAAGCTGAAACGGTGGACAGGACAGGCTTGCTTTTGCCTGGTCGTCAACCAGACCTTGTTTCAAAGGTGGCAGCTGCCTCAAAGGGACCAACTATTTTGGTCTTAATGTCTGGTGGTCCCGTGGATATAACTTTTGCAAAGAATAACCCTCGAATTGTGGGTATTCTGTGGGCTGGTTATCCGGGCCAAGCTGGTGGTGCTGCCATTGCAGATATCTTGTTTGGAACAGCTAACCCAGGGGGAAAGCTGCCAGTAACATGGTACCCAGAAGAGTACCTAACAAAGTTACCAATGACAAACATGGCAATGCGAGCGACCAAATCAGCAGGGTATCCAGGAAGAACGTATCGGTTCTACAATGGTCCAGTGGTGTATCCATTTGGACACGGGTTGACATACACACACTTTGTTCATACACTAGCAAGTGCTCCCACAGTGGTGTCAGTTCCCTTGAATGGTCATCGCCGTGCCAATGTCACCAATATTTCAAACAGGGCAATTAGAGTGACACATGCGCGGTGTGACAAGCTCTCCATCACCCTCCAGGTAGACATTAAAAATGTAGGGTCCAGAGATGGCACGCACACGTTGTTAGTTTTCTCTGCTCCCCCTGCAGGTTTTGGTCATTGGGCACTAGAGAAGCAACTAGTGGCCTTTGAGAAGGTCCATGTTCCTGCCAAGGGTCAACATAGAGTTGGAGTTAATATTCATGTGTGCAAGCTCCTAAGTGTAGTGGATAGGTCTGGGATTAGGAGAATCCCGTTGGGGGAACACAGTTTTAACATTGGTGATGTTAAACACTCCGTGTCACTTCAAGCTGCAGCACTTGGGATTATCAAGTCCTGA 2316 0.497 MSSSFSPLAIFLLLLLVRYTCEAREPFACDPKNGGTKKMAFCKVSLAIAERVKDLIGRLTLEEKVRLLVNNAAAVPRLGMKGYEWWSEALHGVSNLGPAVKFNAQFPAATSFPQVITTAASFNASLWEAIGQVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGTYAATYVRGLQGTHANRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDIEDTFDVPFKMCVSEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGLWQLDGYIVSDCDSVGVFYDNQHYTPTPEEAAADAIKAGLDLDCGPFLAVHTQNAVKKGLLSEADVNGALVNTLTVQMRLGMFDGEPTAHPYGHLGPKDVCKPAHQELALEAARQGIVLLKNTGPVLPLSSQLHRTVAVIGPNSKATITMIGNYAGVACGYTNPLQGIGRYARTVHQLGCQNVACKNDKLFGPAINAARQADATVLVMGLDQSIEAETVDRTGLLLPGRQPDLVSKVAAASKGPTILVLMSGGPVDITFAKNNPRIVGILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPEEYLTKLPMTNMAMRATKSAGYPGRTYRFYNGPVVYPFGHGLTYTHFVHTLASAPTVVSVPLNGHRRANVTNISNRAIRVTHARCDKLSITLQVDIKNVGSRDGTHTLLVFSAPPAGFGHWALEKQLVAFEKVHVPAKGQHRVGVNIHVCKLLSVVDRSGIRRIPLGEHSFNIGDVKHSVSLQAAALGIIKS* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1812 771 PRINTS Glycosyl hydrolase family 3 signature 112 131 IPR001764 GO:0004553|GO:0005975
Gso19g1812 771 PRINTS Glycosyl hydrolase family 3 signature 199 215 IPR001764 GO:0004553|GO:0005975
Gso19g1812 771 PRINTS Glycosyl hydrolase family 3 signature 273 291 IPR001764 GO:0004553|GO:0005975
Gso19g1812 771 SUPERFAMILY (Trans)glycosidases 39 392 IPR017853 -
Gso19g1812 771 Pfam Glycosyl hydrolase family 3 C-terminal domain 393 623 IPR002772 GO:0004553|GO:0005975
Gso19g1812 771 Pfam Fibronectin type III-like domain 691 754 IPR026891 -
Gso19g1812 771 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 393 626 IPR036881 GO:0004553|GO:0005975
Gso19g1812 771 Pfam Glycosyl hydrolase family 3 N terminal domain 106 348 IPR001764 GO:0004553|GO:0005975
Gso19g1812 771 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 4 766 - -
Gso19g1812 771 Gene3D - 51 367 IPR036962 GO:0004553|GO:0005975
Gso19g1812 771 PANTHER SUGAR HYDROLASE-RELATED 4 766 IPR044993 GO:0009044|GO:0045493
Gso19g1812 771 Gene3D Immunoglobulins 647 767 IPR013783 -
Gso19g1812 771 SMART Fn3_like_2 685 756 IPR026891 -
Gso19g1812 771 Gene3D - 378 624 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1812 Gso-Chr19 46858509 46864957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1812 4 771 Glycoside Hydrolase AT1G02640 71.745 0.0 1163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1812 - - gmx:100809501 1560.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1812 19 46858509 46864957 Gso3g1848 3 44094684 44102868 GST
Gso19g1812 19 46858509 46864957 Gso2g0116 2 1194894 1199440 PCT
Gso19g1812 19 46858509 46864957 Gso10g0122 10 1279800 1285969 PCT
Gso2g0116 2 1194894 1199440 Gso19g1812 19 46858509 46864957 PCT
Gso10g0122 10 1279800 1285969 Gso19g1812 19 46858509 46864957 PCT