Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0116 ATGGGTTCCATCTTTTCACCCTTAACCACTATCTTCCTCCTACTCCTACTCGTACTTTGGGGTGGCGAGGCACGTGACCCTTTTGCTTGTGACCCTAAGAACACCGCCACAAAAAACTTACCATTTTGCAAGGCTTCGTTGGCAACAGGGGCAAGGGTGAAGGACCTCATTGGAAGGTTGACACTGCAAGAAAAAGTTAACTTGCTAGTGAACAATGCCGCGGCAGTGCCACGGCTTGGTATCAAAGGGTATGAGTGGTGGTCGGAGGCACTACATGGGGTCTCAAATGTGGGCCCCGGAACCAAGTTCGGTGGCCAGTTCCCTGCCGCCACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAATGCTTCTCTGTGGGAAGCAATCGGGCGGGTTGCCTCGGACGAAGCAAGAGCAATGTACAATGGTGGAACGGCTGGGCTGACATACTGGAGCCCAAACGTGAACATCTTTAGGGACCCACGGTGGGGCCGCGGACAGGAGACTCCCGGTGAGGACCCAATACTAGCCGGTAAATATGCAGCCAGTTACGTGAGGGGGCTTCAGGGAACTGACGGTAACCGGTTAAAGGTCGCTGCCTCTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCACAGGTTAGCAAGCAGGACATTGAGGACACGTTCAATGTGCCATTCAGAATGTGCGTGAAGGAAGGCAAAGTGGCGAGTGTGATGTGTTCTTACAATCAGGTTAACGGGGTTCCCACCTGTGCGGACCCCATCCTCCTAAAGAGAACAGTTCGTGGCCAATGGGGTCTTAATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTACAATAGCCAACATTACACATCTACCCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCTGGTTTGGATTTGGATTGTGGGCCTTTTCTGGGACAACATACGCAGAATGCTGTGAAGAAAGGCCTCATAAGCGAAGCTGATGTGAATGGGGCTTTATTGAACACATTAACAGTCCAAATGAGGTTAGGGATGTATGATGGTGAGCCATCAAGTCATCCATATAACAACCTTGGTCCAAGAGATGTGTGCACCCAAAGTCACCAAGAGCTTGCCCTTGAAGCCGCAAGACAAGGGATTGTGCTTCTTAAAAACAAAGGTCCTTCTTTGCCTCTCTCCACTAGGCGTGGCCGCACTGTAGCTGTTATTGGGCCCAATTCTAATGTCACTTTCACAATGATTGGCAACTATGCTGGTATTGCTTGTGGATACACTAGTCCCTTACAAGGAATAGGGACATACACCAAGACAATTTATGAGCATGGTTGTGCAAATGTGGCTTGTACTGATGACAAGCAATTCGGGAGAGCCATAAATGCAGCCCAACAAGCAGATGCAACTGTGCTAGTGATGGGCCTAGATCAGTCCATTGAGGCTGAAACTGTGGACAGGGCTAGCCTGCTTCTTCCTGGACATCAGCAAGACCTTGTGTCCAAAGTAGCAGCTGCCTCCAAGGGCCCAACAATTTTGGTCATTATGTCTGGTGGGCCTGTGGATATAACATTTGCGAAGAATGATCCTCGAATCCAAGGAATCTTGTGGGCCGGTTATCCCGGTCAAGCTGGTGGTGCCGCTATAGCAGATATCTTGTTTGGAACATCTAACCCCGGAGGCAAGTTGCCTATGACATGGTACCCACAAGGGTACATTAAAAACTTGCCAATGACAAATATGGCAATGAGAGCAAGCCGAAGCAAAGGGTACCCTGGAAGAACCTACCGATTTTACAATGGCCCAGTGGTGTATCCATTTGGTTACGGATTGTCTTACACGCACTTTGTTCATACATTAACTAGTGCACCCAAATTGGTCTCAATTCCCGTGGATGGGCACCGCCACGGCAACAGCTCCAACATCGCGAACAAGGCAATTAAAGTGACACATGCACGATGTGGCAAGCTTTCCATTAACCTTCACGTGGACGTTAAAAATGTTGGCTCCAAAGATGGCATTCACACGTTGTTGGTGTTCTCAGCCCCACCTGCGGGTAATGGCCATTGGGCTCCACACAAGCAATTAGTGGCTTTTGAGAAAGTCCATATTCCCGCCAAGGCCCAACAACGGGTGAGAGTCAAAATTCATGTTTGTAAGCTCTTGAGCGTGGTTGACCGGTCTGGGACTAGGAGAATTCCAATGGGTTTGCACAGTCTTCACATTGGTGATGTTAAACACTCCGTGTCACTTCAGGCAGAAACACTTGGAATTATCAAGTCCTAA 2319 0.4903 MGSIFSPLTTIFLLLLLVLWGGEARDPFACDPKNTATKNLPFCKASLATGARVKDLIGRLTLQEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGRVASDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDGNRLKVAASCKHFTAYDLDNWNGVDRFHFNAQVSKQDIEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPILLKRTVRGQWGLNGYIVSDCDSVGVFYNSQHYTSTPEEAAADAIKAGLDLDCGPFLGQHTQNAVKKGLISEADVNGALLNTLTVQMRLGMYDGEPSSHPYNNLGPRDVCTQSHQELALEAARQGIVLLKNKGPSLPLSTRRGRTVAVIGPNSNVTFTMIGNYAGIACGYTSPLQGIGTYTKTIYEHGCANVACTDDKQFGRAINAAQQADATVLVMGLDQSIEAETVDRASLLLPGHQQDLVSKVAAASKGPTILVIMSGGPVDITFAKNDPRIQGILWAGYPGQAGGAAIADILFGTSNPGGKLPMTWYPQGYIKNLPMTNMAMRASRSKGYPGRTYRFYNGPVVYPFGYGLSYTHFVHTLTSAPKLVSIPVDGHRHGNSSNIANKAIKVTHARCGKLSINLHVDVKNVGSKDGIHTLLVFSAPPAGNGHWAPHKQLVAFEKVHIPAKAQQRVRVKIHVCKLLSVVDRSGTRRIPMGLHSLHIGDVKHSVSLQAETLGIIKS* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0116 772 SMART Fn3_like_2 686 757 IPR026891 -
Gso2g0116 772 Pfam Glycosyl hydrolase family 3 C-terminal domain 394 624 IPR002772 GO:0004553|GO:0005975
Gso2g0116 772 Gene3D - 52 369 IPR036962 GO:0004553|GO:0005975
Gso2g0116 772 SUPERFAMILY (Trans)glycosidases 40 393 IPR017853 -
Gso2g0116 772 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 3 768 - -
Gso2g0116 772 PANTHER SUGAR HYDROLASE-RELATED 3 768 IPR044993 GO:0009044|GO:0045493
Gso2g0116 772 Gene3D - 379 625 IPR036881 GO:0004553|GO:0005975
Gso2g0116 772 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 394 627 IPR036881 GO:0004553|GO:0005975
Gso2g0116 772 Gene3D Immunoglobulins 649 769 IPR013783 -
Gso2g0116 772 Pfam Glycosyl hydrolase family 3 N terminal domain 106 347 IPR001764 GO:0004553|GO:0005975
Gso2g0116 772 PRINTS Glycosyl hydrolase family 3 signature 113 132 IPR001764 GO:0004553|GO:0005975
Gso2g0116 772 PRINTS Glycosyl hydrolase family 3 signature 200 216 IPR001764 GO:0004553|GO:0005975
Gso2g0116 772 PRINTS Glycosyl hydrolase family 3 signature 274 292 IPR001764 GO:0004553|GO:0005975
Gso2g0116 772 Pfam Fibronectin type III-like domain 688 755 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0116 Gso-Chr2 1194894 1199440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0116 23 772 Glycoside Hydrolase AT1G02640 73.200 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0116 - - gmx:100798630 1551.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0116 2 1194894 1199440 Gso2g0116 2 1194894 1199440 ECH
Gso2g0116 2 1194894 1199440 Gso10g0122 10 1279800 1285969 GST
Gso19g1812 19 46858509 46864957 Gso2g0116 2 1194894 1199440 PCT
Gso3g1848 3 44094684 44102868 Gso2g0116 2 1194894 1199440 PCT
Gso2g0116 2 1194894 1199440 Gso19g1812 19 46858509 46864957 PCT
Gso2g0116 2 1194894 1199440 Gso3g1848 3 44094684 44102868 PCT