LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g0122	ATGGGTTCCATCTTTTCACCCTTAACCAGTATCTTGCTCCTACTCATACTACTTTGGGGTGGCGAGGCACGTGACCCTTTTGCTTGTGACCCTAAGAACACCGCCACAAAAAACTTACCATTTTGCAAGGCTTGGTTGGCAACAGGGGCAAGGGTGAAGGATCTAATTGGAAGGTTAACACTGCAAGAAAAAGTTAACTTGCTAGTGAACAATGCCGCGGCAGTGCCACGGCTTGGTATCAAAGGGTATGAGTGGTGGTCGGAGGCACTACATGGGGTCTCAAATGTGGGCCCCGGAACAAAGTTCGGTGGCCAGTTCCCTGCCGCCACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAATGCTTCTTTGTGGGAAGCAATCGGACGGGTTGCCTCGGACGAAGCACGAGCAATGTACAATGGTGGAACGGCTGGGCTGACATACTGGAGCCCAAACGTGAACATTTTTAGGGACCCACGGTGGGGCCGTGGACAGGAGACTCCCGGTGAGGACCCAATACTAGCCGGTAAATATGCAGCCAGTTACGTAAGAGGGCTACAGGAAACGGACGGTAACCGGTTGAAGGTGGCTGCCTCTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCACAGGTTAGCAAGCAGGACATTGAGGACACGTTCAATGTTCCATTCAGAATGTGCGTGAAGGAAGGCAAAGTGGCAAGTGTGATGTGTTCTTACAATCAGGTTAACGGTGTTCCTACCTGTGCGGACCCCATCCTCCTAAAGAGAACAGTTCGTGGCCAATGGGGTCTCAATGGGTACATTGTATCAGATTGTGACTCTGTTGGGGTGTTTTACAATAGCCAACATTACACATCTACTCCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTTCTAGGACAACATACGCAAAATGCTGTGAAGAAAGGCCTCATAAGCGAAACTGATGTGAATGGGGCTTTATTGAACACATTAACAGTCCAAATGAGGTTAGGGATGTATGATGGTGAGCCATCAAGTCATCCATATGGCAAACTTGGTCCAAGAGATGTGTGCACCCCAAGTCACCAAGAGCTTGCCCTTGAAGCCGCAAGACAAGGGATTGTGCTTCTTAAAAACAAAGGTCCTTCTTTGCCTCTCTCCACTAGGCGTCACCCCACGGTGGCTGTTATTGGGCCCAATTCTAATGTCACTGTCACAATGATTGGCAACTATGCTGGTATTGCTTGTGGATATACAAGCCCCTTAGAAGGAATAGGAAGATACACCAAGACTATTCACGAGCTGGGCTGTGCAAATGTGGCTTGCACTAATGACAAGCAATTCGGGAGAGCTATAAATGTAGCCCAACAAGCAGATGCAACTGTGCTAGTGATGGGCCTGGACCAGTCCATTGAGGCTGAAACTGTGGACCGGGCTGGCCTGCTTCTTCCTGGGCGTCAACAAGACCTTGTGTCGAAAGTAGCAGCTGCCTCCAAGGGCCCAACAATTTTGGTCATAATGTCTGGTGGGCCTGTGGATATAACATTTGCAAAGAATAACCCTAGAATCCAAGCTATCTTGTGGGCCGGTTATCCCGGACAAGCTGGTGGTGCCGCTATAGCAGATATCTTGTTTGGAACATCTAACCCTGGAGGCAAGTTGCCTATGACATGGTACCCACAAGGGTACATTAAAAACTTGCCAATGACAAATATGGCAATGAGAGCAAGCCGAAGCAAAGGGTACCCTGGAAGAACCTACCGATTTTACAATGGCCCAGTGGTGTATCCATTTGGTTACGGATTGTCTTACACACACTTTGTTCATACATTAGCTAGCGCACCCAAATTGGTCTCAATTCCAGTGGATGGGCACCGCCACGGCAACAGCTCCAGCATCGCCAACAAGGCAATTAAAGTGACACATGCACGATGTGGCAAGCTTTCCATTAGCCTTCAAGTGGATGTTAAAAATGTTGGTTCCAAAGATGGCACTCACACTTTGTTAGTGTTCTCCGCACCACCTGCGGGTAATGGCCATTGGGCTCCACACAAGCAACTAGTGGCATTTCAGAAACTTCATATTCCTTCCAAGGCCCAACAACGAGTGAATGTCAACATTCATGTTTGTAAGCTATTGAGCGTGGTTGACCGGTCTGGTACTAGGAGAGTTCCAATGGGTTTGCACAGTCTTCACATTGGTGATGTTAAACACTACGTCTCTCTTCAGGCAGAAACACTTGGAATTATCAAGTCCTGA	2316	0.4827	MGSIFSPLTSILLLLILLWGGEARDPFACDPKNTATKNLPFCKAWLATGARVKDLIGRLTLQEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGRVASDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQETDGNRLKVAASCKHFTAYDLDNWNGVDRFHFNAQVSKQDIEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPILLKRTVRGQWGLNGYIVSDCDSVGVFYNSQHYTSTPEEAAADAIKAGLDLDCGPFLGQHTQNAVKKGLISETDVNGALLNTLTVQMRLGMYDGEPSSHPYGKLGPRDVCTPSHQELALEAARQGIVLLKNKGPSLPLSTRRHPTVAVIGPNSNVTVTMIGNYAGIACGYTSPLEGIGRYTKTIHELGCANVACTNDKQFGRAINVAQQADATVLVMGLDQSIEAETVDRAGLLLPGRQQDLVSKVAAASKGPTILVIMSGGPVDITFAKNNPRIQAILWAGYPGQAGGAAIADILFGTSNPGGKLPMTWYPQGYIKNLPMTNMAMRASRSKGYPGRTYRFYNGPVVYPFGYGLSYTHFVHTLASAPKLVSIPVDGHRHGNSSSIANKAIKVTHARCGKLSISLQVDVKNVGSKDGTHTLLVFSAPPAGNGHWAPHKQLVAFQKLHIPSKAQQRVNVNIHVCKLLSVVDRSGTRRVPMGLHSLHIGDVKHYVSLQAETLGIIKS*	772

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g0122	771	PANTHER	ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE	3	767	-	-
	Gso10g0122	771	Pfam	Fibronectin type III-like domain	687	754	IPR026891	-
	Gso10g0122	771	PRINTS	Glycosyl hydrolase family 3 signature	112	131	IPR001764	GO:0004553\|GO:0005975
	Gso10g0122	771	PRINTS	Glycosyl hydrolase family 3 signature	199	215	IPR001764	GO:0004553\|GO:0005975
	Gso10g0122	771	PRINTS	Glycosyl hydrolase family 3 signature	273	291	IPR001764	GO:0004553\|GO:0005975
	Gso10g0122	771	SMART	Fn3_like_2	685	756	IPR026891	-
	Gso10g0122	771	Pfam	Glycosyl hydrolase family 3 N terminal domain	105	346	IPR001764	GO:0004553\|GO:0005975
	Gso10g0122	771	Gene3D	-	378	624	IPR036881	GO:0004553\|GO:0005975
	Gso10g0122	771	Gene3D	Immunoglobulins	648	768	IPR013783	-
	Gso10g0122	771	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	393	626	IPR036881	GO:0004553\|GO:0005975
	Gso10g0122	771	SUPERFAMILY	(Trans)glycosidases	39	392	IPR017853	-
	Gso10g0122	771	Pfam	Glycosyl hydrolase family 3 C-terminal domain	393	623	IPR002772	GO:0004553\|GO:0005975
	Gso10g0122	771	Gene3D	-	51	367	IPR036962	GO:0004553\|GO:0005975
	Gso10g0122	771	PANTHER	SUGAR HYDROLASE-RELATED	3	767	IPR044993	GO:0009044\|GO:0045493

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g0122	Gso-Chr10	1279800	1285969	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g0122	22	771	Glycoside Hydrolase	AT1G02640	72.800	0.0	1161

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g0122	-		-	gmx:100778624	1551.57

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso2g0116	2	1194894	1199440	Gso10g0122	10	1279800	1285969	GST
	Gso19g1812	19	46858509	46864957	Gso10g0122	10	1279800	1285969	PCT
	Gso3g1848	3	44094684	44102868	Gso10g0122	10	1279800	1285969	PCT
	Gso10g0122	10	1279800	1285969	Gso19g1812	19	46858509	46864957	PCT
	Gso10g0122	10	1279800	1285969	Gso3g1848	3	44094684	44102868	PCT