Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1828 ATGCAACTGTTCCTGCACTGGATTCAGAACTTTCTTGCCCCATTGCAGTTTCAACTTGTTGCACACATGAAGAGCCTAGTGGCAGTGCTTTTACTTGTAGCAATAAGCACTGCCGTGGAAAGCAATGGAGAAGACAATGGTGGACCATGTAAACAGAATGCATTCAAGGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCGGTTGGAGATGGAATAACACTGAACACAGTTGCATTCGAAAATGCAATGTTTTATCTCAAGTCATTTGCTGACAAAGGTGGTGCTCAACTATATGTTCCATCTGGCAAATGGCTAACTGGGAGTTTTAACCTCACCAGTCACCTCACTTTGTTCCTTGAGAGAGGAGCTATCATCATTGCATCTCAGGATTATTCTCATTGGGACATAGTGGATTTCCTCCCTTCTTATGGTAGAGGAATTGGGAGATATCGCAGCTTGATCTATGGGCAGAATTTAAGCGATGTGGTAATAACAGGTGATAATGGAACTATAGATGGACAAGGCTCTATCTGGTGGGAGCTGTTCAGTTCTAATTCCTTAAATTATAGTCGACCAAATCTTATAGAATTTGTTGATTCGGTTGATATCATAATTTCCAATTTGACTTTTCTTGACTCTCCTGCTTGGGGCATCCATCCAGTACATTGCAGTAACGTTCAAATTCAAAACATAACTTCTCGTGCACCAGCTGAATTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTCGGTATGTATGCATTGAGAACAGTAACATTAGCACTGGTCATGATGCAGTGGTGCTGAAGAGTGGTTGGGATCAGTATGGCATTGCCTATGGAAAACCAACCTCAAGTGTTCACATCAGTAATGTTTACCTACAATCATCATCAGGTGCTGGCTTGGCATTTGGGAGTGAGATGTCTGGGGGGATATCTGATATTATTGCAGAGAAGCTTCATATACTCAACTCTCCTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAGAGGGATCTTCATTTCTGATGCAGAATTGGAAAATATTAGCTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGATGACAAGTATGACACAAGTGCACTTCCAATTGTTGGTGACATTACTTTCAAGAATGTGATTGGTGCAAATATTAGTGTTGCTGGGAATTTTTCAGGAATCGTTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGCTCTGAGCCATCTCCTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCTGAGGATGTGATTCCCGAGCCATGTCCTGATCTCCAGAGCTCGTATTCCAAGTTTTCCTTTTCTTGTTTTTCTTCTCTATATCCACTCTTTAGTAATGTCTCAGGCTATTTGGATCATCAACCACAAGAATTACAGTCACTCATTTTCATTCACTCTATACATGAGATACAAAATTCATAA 1494 0.411 MQLFLHWIQNFLAPLQFQLVAHMKSLVAVLLLVAISTAVESNGEDNGGPCKQNAFKARPHSVSILEFGAVGDGITLNTVAFENAMFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLERGAIIIASQDYSHWDIVDFLPSYGRGIGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWELFSSNSLNYSRPNLIEFVDSVDIIISNLTFLDSPAWGIHPVHCSNVQIQNITSRAPAEFPYTSGIVPDSSRYVCIENSNISTGHDAVVLKSGWDQYGIAYGKPTSSVHISNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTKGRGGYMRGIFISDAELENISLGISMTGYSGFHPDDKYDTSALPIVGDITFKNVIGANISVAGNFSGIVESPFSTICLSNVTFSLSSEPSPSWFCSNVIGFSEDVIPEPCPDLQSSYSKFSFSCFSSLYPLFSNVSGYLDHQPQELQSLIFIHSIHEIQNS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1828 497 PANTHER POLYGALACTURONASE-RELATED 27 466 - -
Gso3g1828 497 PANTHER PECTIN LYASE-RELATED 27 466 - -
Gso3g1828 497 Pfam Glycosyl hydrolases family 28 153 434 IPR000743 GO:0004650|GO:0005975
Gso3g1828 497 SUPERFAMILY Pectin lyase-like 49 450 IPR011050 -
Gso3g1828 497 Gene3D - 49 436 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1828 Gso-Chr3 43923448 43926763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1828 23 462 Glycoside Hydrolase AT3G16850 60.674 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1828 - - gmx:100787190 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1795 19 46689954 46693386 Gso3g1828 3 43923448 43926763 GST
Gso3g1828 3 43923448 43926763 Gso2g0134 2 1385880 1389765 PCT
Gso3g1828 3 43923448 43926763 Gso10g0140 10 1487121 1490963 PCT
Gso2g0134 2 1385880 1389765 Gso3g1828 3 43923448 43926763 PCT
Gso10g0140 10 1487121 1490963 Gso3g1828 3 43923448 43926763 PCT