Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0134 ATGAAGAGGCTCGTAACTGTGCTTTTACTCATAATATTAAGCACTGCTCTGGAAGGCAATGGAGAAGATGATCATGAACCGTGTAAAGAAAAAGTGTTGGATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTTGGGGCAGTTGGAGATGGAAAAACACTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGGGCTAAACTATATGTTCCATCTGGCAAGTGGCTCACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTTCTTGAAAGAGGCGCAACCATCATCGCATCACAGGATTATGCACACTGGACTGCAATGGATCCCCTACCCTCCTATGGTCGAGGTATTGATGTTCCTGTTGGGAGATACCGCAGTTTGATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGTACTCATTCCTTAAATTATAGCCGACCACATATTATAGAACTTGTTGGTTCTGATAATATCATAATCTCAAATTTGACATTTTTAAACTCTCCTGCTTGGAGCATCCATCCCGTATATTGCAGTAACATTCAAATCCAGAAGATAACAGTTCAGGCACCAACCAAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTGACAACTGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATGAATATGGAGTTGCCTATGGCAAACCAACCTCAAACGTCCACATCAGGGGTGTTTATCTACAATCGTCATCTGGTGCTGGCCTAGCGTTTGGAAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTTTTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGCTACATGAAAAACATTTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGTTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTGCAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTCAAACGTGACTTTTTCTACCAGTTCCGAGTCATCTCCTTCATGGTTTTGTTCTAACGTAATGGGAATCTCCAAGGAGGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCATCTAGTTTTGTCTCAAGCGCATGA 1368 0.4218 MKRLVTVLLLIILSTALEGNGEDDHEPCKEKVLDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPVGRYRSLIYGQNLSDVVITGDNGIIDGQGSVWWDLISTHSLNYSRPHIIELVGSDNIIISNLTFLNSPAWSIHPVYCSNIQIQKITVQAPTKFPYTSGIVPDSSEHVCIDNCNISTGHDAIVLKSGWDEYGVAYGKPTSNVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTFGIELKTTRGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGANIAIAGNFSGIVDSPFTPICLSNVTFSTSSESSPSWFCSNVMGISKEVFPEPCPDLQNTYSNFSSCFSSLHPSSSFVSSA* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0134 455 Gene3D - 25 422 IPR012334 -
Gso2g0134 455 PANTHER PECTIN LYASE-RELATED 5 447 - -
Gso2g0134 455 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Gso2g0134 455 SMART pbh1 296 317 IPR006626 -
Gso2g0134 455 SMART pbh1 325 346 IPR006626 -
Gso2g0134 455 SMART pbh1 184 209 IPR006626 -
Gso2g0134 455 SMART pbh1 234 255 IPR006626 -
Gso2g0134 455 SMART pbh1 268 290 IPR006626 -
Gso2g0134 455 SUPERFAMILY Pectin lyase-like 32 437 IPR011050 -
Gso2g0134 455 PANTHER POLYGALACTURONASE-RELATED 5 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0134 Gso-Chr2 1385880 1389765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0134 3 443 Glycoside Hydrolase AT3G16850 59.276 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0134 - - gmx:100801823 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0134 2 1385880 1389765 Gso2g0134 2 1385880 1389765 ECH
Gso2g0134 2 1385880 1389765 Gso10g0140 10 1487121 1490963 GST
Gso19g1795 19 46689954 46693386 Gso2g0134 2 1385880 1389765 PCT
Gso3g1828 3 43923448 43926763 Gso2g0134 2 1385880 1389765 PCT
Gso2g0134 2 1385880 1389765 Gso19g1795 19 46689954 46693386 PCT
Gso2g0134 2 1385880 1389765 Gso3g1828 3 43923448 43926763 PCT