Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1795 ATGCAACTGTTCCTGCACTCGATTCAGAACTTTCTTGCGCCATTTCAGTTTCAACTTGTTGCACACATGAAGGGGCTAGTGGCAGTGCTTTTACTTGTAGCAATAAGCACTGCCGTGGAAAGCAATGGGGAAGACAATGGTGGACCATGTAAACAGAATGCATTGAAGGCTAGACCTCACAGTGTGTCGATCTTGGAGTTTGGGGCGGTTGGAGACGGAATAACACTGAACACAGTTGCGTTCGAAAATGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGTGGTGCCCAACTATATGTTCCTTCTGGCACATGGCTAACTGGGAGTTTTAATCTCACCAATCACCTCACTTTGTTCCTTGAGAGAGGAGCTACCATCATTGCATCTCAGGATTATTCTCATTGGGATATAGTGGATTTCCTCCCTTCTTATGGCAGAGGAATTGGGAGATATCGCAGCTTGATCTATGGGCAGAATTTAAGCGATGTGGTAATAACAGGTGATAATGGAACTATAGATGGGCAAGGCTCCATCTGGTGGAAGCTGTTCAATTCTAATTCCTTAAATTACACTCGACCAAATCTTATAGAATTTGTTGATTCTGTTGATGTCATAATTTCCAATTTGACATTTCTAGACTCTCCTGCTTGGGGCATCCATCCAGTATATTGCAGCAACGTTCAAATTCAAAACATAACTTATCGTGCACCAGCCGAATTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTCAGAATGTATGCATTGAGAACAGTAACATTAGCACTGGTCATGATGCAATTGTTCTGAAGAGTGGTTGGGATCAGTATGGCATTGCCTATGGAAAACCAACCTCAAATGTTCACATCAGTAATGTTTACCTACAATCATCATCAGGTGCTGGCTTGGCATTTGGAAGTGAGATGTCTGGGGGAATATCTGTTATTATTGCAGAAAAGCTTCATATTCTCAACTCTCCTATTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGCTATATGAGAGGCATCTTCATTTCTGATGCAGAATTGGAAAATATTAGCTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGATGACAAGTATGACACTAGTTCACTTCCAGTTGTTGGTGACATTACTTTCAAGAATGTGATTGGGGCAAATATTAGTGTTGCTGGGAATTTTTCAGGAATAGTTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGCTCCGAGCCATCTCCTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCTGAGCATGTGATTCCTGAGCCATGTCCTGATATCCAGAGCTCGTATTCCAAGTTTCCCTTTTCTTGCTTTTCTTCTCTATATCCACTCTTTAATAATGTCTCAGGCCATTTGGATCATCAACCACAAGAATTATAG 1449 0.4134 MQLFLHSIQNFLAPFQFQLVAHMKGLVAVLLLVAISTAVESNGEDNGGPCKQNALKARPHSVSILEFGAVGDGITLNTVAFENAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTNHLTLFLERGATIIASQDYSHWDIVDFLPSYGRGIGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWKLFNSNSLNYTRPNLIEFVDSVDVIISNLTFLDSPAWGIHPVYCSNVQIQNITYRAPAEFPYTSGIVPDSSQNVCIENSNISTGHDAIVLKSGWDQYGIAYGKPTSNVHISNVYLQSSSGAGLAFGSEMSGGISVIIAEKLHILNSPIGIELKTTRGRGGYMRGIFISDAELENISLGISMTGYSGFHPDDKYDTSSLPVVGDITFKNVIGANISVAGNFSGIVESPFSTICLSNVTFSLSSEPSPSWFCSNVIGFSEHVIPEPCPDIQSSYSKFPFSCFSSLYPLFNNVSGHLDHQPQEL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1795 482 PANTHER POLYGALACTURONASE-RELATED 27 466 - -
Gso19g1795 482 PANTHER PECTIN LYASE-RELATED 27 466 - -
Gso19g1795 482 Gene3D - 50 437 IPR012334 -
Gso19g1795 482 Pfam Glycosyl hydrolases family 28 153 434 IPR000743 GO:0004650|GO:0005975
Gso19g1795 482 SUPERFAMILY Pectin lyase-like 49 448 IPR011050 -
Gso19g1795 482 SMART pbh1 343 364 IPR006626 -
Gso19g1795 482 SMART pbh1 252 273 IPR006626 -
Gso19g1795 482 SMART pbh1 286 308 IPR006626 -
Gso19g1795 482 SMART pbh1 202 224 IPR006626 -
Gso19g1795 482 SMART pbh1 225 251 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1795 Gso-Chr19 46689954 46693386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1795 23 462 Glycoside Hydrolase AT3G16850 59.775 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1795 - - gmx:100815184 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1795 19 46689954 46693386 Gso3g1828 3 43923448 43926763 GST
Gso19g1795 19 46689954 46693386 Gso2g0134 2 1385880 1389765 PCT
Gso19g1795 19 46689954 46693386 Gso10g0140 10 1487121 1490963 PCT
Gso2g0134 2 1385880 1389765 Gso19g1795 19 46689954 46693386 PCT
Gso10g0140 10 1487121 1490963 Gso19g1795 19 46689954 46693386 PCT