Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0140 ATGAAGAGTCTCGTAGCTGTGCTTTTAGTTATAGTATTAAGCACTGCTCTGGAAAGCAATGGAGAAGATGATCATGAACGATGTAAACAGGAAGCAGTGGATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTCGGAGCAGTTGGAGACGGGAAAACGCTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGGGCTAAACTATATGTTCCATCTGGCAAGTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAGCGAGGCGCAACCATCATTGCATCACAGGATTATGCACACTGGACTGCAATGGACCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTAGTGGGAGATATCGCAGTTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGCAATTATTGATGGGCAGGGTTCTGTCTGGTGGGACCTAATCGGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCACAATCTCAAATTTGACATTTTTAAACTCTCCTGCCTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCAGAAGATAACAGTTCATGCACCAACTGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTTACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAAGGTCCACATCCGGGGTGTTTATCTACAATCTTCATCTGGCGCTGGCCTAGCATTTGGGAGTGAGATGTCTGGAGGCATATCTGATATAATGGCAGAGCAGCTCCATATTACCAACTCAACTATTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGTTATATGAAAAACATCTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGCTCTGGCTCCCATCCAGATGACAAGTACGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTACAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTGAACGCGACCTTTTCTTCCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTGACATAATGGGAATCTCCGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGA 1371 0.4289 MKSLVAVLLVIVLSTALESNGEDDHERCKQEAVDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPSGRYRSLIYGQNLSDVVITGDNAIIDGQGSVWWDLIGTHSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKITVHAPTEFPYTSGIVPDSSEHVCIYNSNISTGHDAIVLKSGWDQYGVAYGKPTSKVHIRGVYLQSSSGAGLAFGSEMSGGISDIMAEQLHITNSTIGIELKTTRGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGTNIAIAGNFSGIVDSPFTPICLLNATFSSSSESSSPSWFCSDIMGISEEVFPEPCPDLQNTYSNFSSCFSSLHPSSSYVSSA* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0140 456 SUPERFAMILY Pectin lyase-like 34 439 IPR011050 -
Gso10g0140 456 PANTHER PECTIN LYASE-RELATED 5 448 - -
Gso10g0140 456 Gene3D - 19 417 IPR012334 -
Gso10g0140 456 Coils Coil 453 456 - -
Gso10g0140 456 PANTHER POLYGALACTURONASE-RELATED 5 448 - -
Gso10g0140 456 Pfam Glycosyl hydrolases family 28 135 376 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0140 Gso-Chr10 1487121 1490963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0140 1 444 Glycoside Hydrolase AT3G16850 58.652 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0140 - - gmx:100818007 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0134 2 1385880 1389765 Gso10g0140 10 1487121 1490963 GST
Gso19g1795 19 46689954 46693386 Gso10g0140 10 1487121 1490963 PCT
Gso3g1828 3 43923448 43926763 Gso10g0140 10 1487121 1490963 PCT
Gso10g0140 10 1487121 1490963 Gso19g1795 19 46689954 46693386 PCT
Gso10g0140 10 1487121 1490963 Gso3g1828 3 43923448 43926763 PCT