Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1347 ATGGCCGAGCACGATTTTGATGGACATGTTGTAGGATATGTGCCCGAGGACCCTAATTTTCCTCAGAATCATTCTGATGAACATGATGTAGGGACTGTGATTGATAGCTCTGGATTTCCTCACCTGCTGCCTGATGAAGATGATGCAGGCAATTTGGTGGAGGATGCCAATTTTCCTGAAAATCATTTTGATGGACATGAACATGATGTTGGAGGTTTTCCTGGGGACACGGACTCTCCACAGAAGGAGGAGCATGTTGAAGAAGGTCATGGTGCTGGAGATGTGCCTGAGGATTTTGATTCTCTGCTGAAACAGGAATCTGAGATTGATTCGAAAGGGAATGAAATTAAAAAGTGGCCCGGATGGCCTGGCGAGAATGTGTTCAGGATGTTGGTTCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGCGAGTTTATAAAGAAAATTACAGAAGAGACTAAGGCGCGGATTAAAATTCTTGATGGTCCACCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAACCAGATCGTCCCATACCACCTGCTATTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACCTTGTGGATAGTGCTTTGGCAGCTGGGCGATCAGTTGTTACCAGGCTTCTAGTAGCAGATACTCAAGCAGGAAGCTTGATCGGAAAGCAGGGATCAACCATAAAATCCATTCAAGATGGCTCTGGTTGTACTATACGTGTTCTTGGATCAGAAAACCTGCCAGTATTTGCTTTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTTGAAACACAGATGCAAAGGCCAGATGTTAGAGTTAACCAGAATGTGCCACCACATCAAAATTGGGGTCCTCCTCCTCAAGGGTTTCCTGCTCCTGCTGGTGGTGGTGGTGGAGGACCTGCTTTTGCACCAAATCATCAATATATGCCACCTTCACATCACTATGATAGCTATTATCCACCTACTGAGTTGCCTCCCATGGACAAACACCTTCATCAAGGTCCACCACCTGCCTATGCAAAGGATGCTTCAATGGGAATTCATTCATCAAGTGCACCACCACAACAATCTGTTGTAACTAAGGTCACACAACACATGCAAATTCCTCTTACATATGCAGATGCTGTTATAGGAGCATCAGGCACAAATATCAGCTATATACGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTGCCAGGTGAGATGACTGTTGAGATAAGCGGGACTTCTTCTCAAATACAGGCAGCCCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGTGCTACACAGGATCCTATGGGGGGATCAGTCAGCCAAGGTTACAGTGCCTATCCAACAACTGCTCCAGTTTATGCTCCACCCACTAGTGCTGGTGGTGGTGGTCATACAGGCCATGCGCCTTCTGCAGATTATGGCCCCCTATATGGTACCAATTATGGGTATTAA 1590 0.4553 MAEHDFDGHVVGYVPEDPNFPQNHSDEHDVGTVIDSSGFPHLLPDEDDAGNLVEDANFPENHFDGHEHDVGGFPGDTDSPQKEEHVEEGHGAGDVPEDFDSLLKQESEIDSKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAIDGLLRVHKQVINVDRDLVDSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSENLPVFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQRPDVRVNQNVPPHQNWGPPPQGFPAPAGGGGGGPAFAPNHQYMPPSHHYDSYYPPTELPPMDKHLHQGPPPAYAKDASMGIHSSSAPPQQSVVTKVTQHMQIPLTYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFMAEAASATQDPMGGSVSQGYSAYPTTAPVYAPPTSAGGGGHTGHAPSADYGPLYGTNYGY* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1347 529 CDD PCBP_like_KH 218 286 - -
Gso3g1347 529 Coils Coil 459 479 - -
Gso3g1347 529 CDD PCBP_like_KH 127 196 - -
Gso3g1347 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 473 IPR036612 GO:0003723
Gso3g1347 529 MobiDBLite consensus disorder prediction 1 52 - -
Gso3g1347 529 Gene3D K Homology domain, type 1 125 185 IPR036612 GO:0003723
Gso3g1347 529 MobiDBLite consensus disorder prediction 72 96 - -
Gso3g1347 529 ProSiteProfiles Type-1 KH domain profile. 402 466 - -
Gso3g1347 529 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Gso3g1347 529 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 51 523 - -
Gso3g1347 529 ProSiteProfiles Type-1 KH domain profile. 216 285 - -
Gso3g1347 529 Pfam KH domain 128 180 IPR004088 GO:0003723
Gso3g1347 529 Pfam KH domain 219 285 IPR004088 GO:0003723
Gso3g1347 529 Pfam KH domain 404 467 IPR004088 GO:0003723
Gso3g1347 529 Gene3D K Homology domain, type 1 390 478 IPR036612 GO:0003723
Gso3g1347 529 SMART kh_6 401 471 IPR004087 GO:0003676
Gso3g1347 529 SMART kh_6 124 197 IPR004087 GO:0003676
Gso3g1347 529 SMART kh_6 215 290 IPR004087 GO:0003676
Gso3g1347 529 CDD KH-I 404 467 - -
Gso3g1347 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 117 180 IPR036612 GO:0003723
Gso3g1347 529 Gene3D K Homology domain, type 1 216 292 IPR036612 GO:0003723
Gso3g1347 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 213 298 IPR036612 GO:0003723
Gso3g1347 529 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 51 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1347 Gso-Chr3 39367922 39372711 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1347 K21444 - gmx:100813235 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1348 19 42185323 42190143 Gso3g1347 3 39367922 39372711 GST
Gso3g1347 3 39367922 39372711 Gso2g1162 2 14537813 14543968 PCT
Gso3g1347 3 39367922 39372711 Gso10g0284 10 3021287 3027453 PCT
Gso2g1162 2 14537813 14543968 Gso3g1347 3 39367922 39372711 PCT
Gso10g0284 10 3021287 3027453 Gso3g1347 3 39367922 39372711 PCT