Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1348 ATGTCCAATCCGAAAGAAAATATACTCATGGCCGAGCACGGTTTTGATGGACATGATGTAGGATATGTGCCTGAGGACCCTAATTTTCCTCAGAATCATTCTGATGAACATGATGTAGGGACTGTGATTGATAGCTCCGGATTTCCTCACCTGCTACCTGATGAAGATGATGCAGGCAATTTGATGGAGGACGCCAATTTTCCTGAAAATGATTTTGTTGGGCATGAACATGATGTTGGAGGTTTGGCTGGGGACGCGGATTCTCCACCGGAGGAGCATGTTGAGGAAGTTCATGGTGCTGGAGATGTGCCTGAGGATTTTGATTCTCTGCCGAAACAGGGATCCGAGATTGATTCGAAGGGAAATGAAATAAAAAAGTGGCCGGGATGGCCTGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGCGAGTTTATAAAGAAAATCACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGACGGTCCACCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATTGTCCCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGATCGTGACCTTGCAGATAGTGCATTGGCTGCTGGGCGATCAGTTGTTACCAGGCTTCTAGTGGCGGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGCTCTGGTTGCACTATACGTGTTCTTGGATCAGAAAACCTGCCAATATTTGCTTTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTAGGAGTTTTTGAAACGCAGATGCAAATGTCAGATGTTAGAGTTAACCAGAATTTGCCACCGCATCAAAATTGGGGTCCTCCTCCTCAAGGGTTTCCTGCTCCTGCTGGTGGTGGTGGTGGAGGAGGACCTGCTTTTGCACCTAATCATCAATATATGCCACCTTCACATCACTATGATAGTTATTATCCACCTACTGAGTTGCCTCCCATGGACAAACACCTTCATCAAGGTCCACCACCTGCCTATGCAAGGGATGCTTCTATGGGAATTCATTCATCAAGTGCACAACCACAACAATCTGTTGTAACTAAGGTCACACAGCACATGCAGATTCCTCTTACATATGCAGATGCTGTTATAGGAGCATCGGGCACAAATATCAGCTATATACGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGGACTTCTTCTCAAATACAGGCAGCCCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGTGCGACACAGGATCCTATGGGGGGATCAGTCAGCCAAGGTTACAGTGCCTATCCAACAACTGCTCCAGTTTATGCTCCTCCACCCACTAGCGCTGGTGGTCATACAGGCCATGCGCCTTCTGCAGATTATGGCCCCGTATATGGTACCAATTATGGGTATTAA 1614 0.4597 MSNPKENILMAEHGFDGHDVGYVPEDPNFPQNHSDEHDVGTVIDSSGFPHLLPDEDDAGNLMEDANFPENDFVGHEHDVGGLAGDADSPPEEHVEEVHGAGDVPEDFDSLPKQGSEIDSKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDCPIPPAVDGLLRVHKQVINVDRDLADSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSENLPIFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQMSDVRVNQNLPPHQNWGPPPQGFPAPAGGGGGGGPAFAPNHQYMPPSHHYDSYYPPTELPPMDKHLHQGPPPAYARDASMGIHSSSAQPQQSVVTKVTQHMQIPLTYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFMAEAASATQDPMGGSVSQGYSAYPTTAPVYAPPPTSAGGHTGHAPSADYGPVYGTNYGY* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1348 537 CDD PCBP_like_KH 226 294 - -
Gso19g1348 537 CDD PCBP_like_KH 135 204 - -
Gso19g1348 537 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 221 307 IPR036612 GO:0003723
Gso19g1348 537 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 59 531 - -
Gso19g1348 537 SMART kh_6 410 480 IPR004087 GO:0003676
Gso19g1348 537 SMART kh_6 223 298 IPR004087 GO:0003676
Gso19g1348 537 SMART kh_6 132 205 IPR004087 GO:0003676
Gso19g1348 537 Gene3D K Homology domain, type 1 398 487 IPR036612 GO:0003723
Gso19g1348 537 Coils Coil 468 488 - -
Gso19g1348 537 MobiDBLite consensus disorder prediction 16 49 - -
Gso19g1348 537 Pfam KH domain 136 188 IPR004088 GO:0003723
Gso19g1348 537 Pfam KH domain 227 293 IPR004088 GO:0003723
Gso19g1348 537 Pfam KH domain 413 476 IPR004088 GO:0003723
Gso19g1348 537 Gene3D - 133 302 - -
Gso19g1348 537 ProSiteProfiles Type-1 KH domain profile. 133 188 - -
Gso19g1348 537 MobiDBLite consensus disorder prediction 330 387 - -
Gso19g1348 537 ProSiteProfiles Type-1 KH domain profile. 411 475 - -
Gso19g1348 537 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 59 531 - -
Gso19g1348 537 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 125 187 IPR036612 GO:0003723
Gso19g1348 537 CDD KH-I 413 476 - -
Gso19g1348 537 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 402 482 IPR036612 GO:0003723
Gso19g1348 537 ProSiteProfiles Type-1 KH domain profile. 224 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1348 Gso-Chr19 42185323 42190143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1348 K21444 - gmx:100799901 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1348 19 42185323 42190143 Gso3g1347 3 39367922 39372711 GST
Gso19g1348 19 42185323 42190143 Gso2g1162 2 14537813 14543968 PCT
Gso19g1348 19 42185323 42190143 Gso10g0284 10 3021287 3027453 PCT
Gso2g1162 2 14537813 14543968 Gso19g1348 19 42185323 42190143 PCT
Gso10g0284 10 3021287 3027453 Gso19g1348 19 42185323 42190143 PCT