Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1162 ATGTCTGGGGAAGTTTTTGATGGACAAGATGCAGGCTATGTGCCTGAGAACCCTGAGTTTCCACAAAACCATTCTGATGAACACGATGGAGGAAATGTGATTGATGACTCTGGGTTTCCGCAGCTGCAGCCTGATGAACATGATGCTGGAGGGTTTCCGCAGCTGCAGCTGCAGCCTGATGAACACGAAGGCGGCAATTTGGCTGAGGATGCCAATCATCCTGAACATAATTTTGACGGGAATGATGTTGAAGGTTTGCCTGGACCTGATTTTCCTCCTCAAGAGCATGCAGAGGAACAACATGTTGGAGGAGACGTGACTGAGAATTTTGCCTCTGAGGAAAAGCAGGAACCTGAGGAGGATTTGAAAGGAGGTGAAGTAAAGAAGTGGCCAGGGTGGCCTGGAGAGAATGTTTTTAGGATGTTGGTTCCCGTGCAAAAGGTTGGCAGCATTATTGGACGAAAAGGAGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGAATAAAAATTCTTGATGGTCCTCCTGGGACTGCAGAAAGAGCTGTAATGGTTTCTGCGAAAGAAGAGCCAGATCGCAGCATACCGCCTGCTGTTGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAACGTGGACCCTCATCCTGCCGATAGTGCATCAGGTGCAGGACGCCCAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCCACTATAAAATCCTTTCAAGATGCCACAGGGTGCAATATACGCATTCTTGGTTCAGAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTTCTGGGGTTCACAAGGCGGTTGAACTTGTTGCAATTCATCTACGTAAATTCTTGGTTGATCGCAGCATAGTTGTAGTATTTGAAACACAAATGCAAAGGCCAGATGTTCGAGTAAACCAGAATGTGCCACCAGGCCCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCAAGCTCCTGGACCTGGTAGTGGTGGTGGACCTGCTTTTCCACCCAATCCTCAGTATATGCCGCCTTCACATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCTATGGACAAGCACCTTCATCAGGGTCCAGCACCTGCCTATGTAAGGGATGCTTCTATGGGAATTCATTCATCCAGTGCACAGCCACAACAATCTGTTGTGACTAAGGTCACGCAGCACATGCAAATTCCTTTGTCCTATGCAGATGCTGTTATTGGAGCATCAGGGGCAAACATCAGCTACATCCGTCGAGCTAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCAGGAGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTACAGAGCTGCATATAG 1452 0.4752 MSGEVFDGQDAGYVPENPEFPQNHSDEHDGGNVIDDSGFPQLQPDEHDAGGFPQLQLQPDEHEGGNLAEDANHPEHNFDGNDVEGLPGPDFPPQEHAEEQHVGGDVTENFASEEKQEPEEDLKGGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMVSAKEEPDRSIPPAVDGLLRVHKQVVNVDPHPADSASGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDATGCNIRILGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAIHLRKFLVDRSIVVVFETQMQRPDVRVNQNVPPGPPHQPWGPPQGFQAPGPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPAPAYVRDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQSCI* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1162 483 ProSiteProfiles Type-1 KH domain profile. 136 203 - -
Gso2g1162 483 Pfam KH domain 230 296 IPR004088 GO:0003723
Gso2g1162 483 Pfam KH domain 139 191 IPR004088 GO:0003723
Gso2g1162 483 Pfam KH domain 417 480 IPR004088 GO:0003723
Gso2g1162 483 CDD PCBP_like_KH 229 297 - -
Gso2g1162 483 ProSiteProfiles Type-1 KH domain profile. 415 479 - -
Gso2g1162 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 406 483 IPR036612 GO:0003723
Gso2g1162 483 Gene3D - 136 304 - -
Gso2g1162 483 Gene3D K Homology domain, type 1 402 483 IPR036612 GO:0003723
Gso2g1162 483 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 63 483 - -
Gso2g1162 483 MobiDBLite consensus disorder prediction 323 389 - -
Gso2g1162 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 220 306 IPR036612 GO:0003723
Gso2g1162 483 CDD KH-I 417 480 - -
Gso2g1162 483 ProSiteProfiles Type-1 KH domain profile. 227 296 - -
Gso2g1162 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 128 191 IPR036612 GO:0003723
Gso2g1162 483 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 63 483 - -
Gso2g1162 483 MobiDBLite consensus disorder prediction 326 343 - -
Gso2g1162 483 CDD PCBP_like_KH 138 207 - -
Gso2g1162 483 MobiDBLite consensus disorder prediction 63 80 - -
Gso2g1162 483 MobiDBLite consensus disorder prediction 1 103 - -
Gso2g1162 483 SMART kh_6 414 483 IPR004087 GO:0003676
Gso2g1162 483 SMART kh_6 226 301 IPR004087 GO:0003676
Gso2g1162 483 SMART kh_6 135 208 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1162 Gso-Chr2 14537813 14543968 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1162 K21444 - gmx:100818363 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1162 2 14537813 14543968 Gso2g1162 2 14537813 14543968 ECH
Gso2g1162 2 14537813 14543968 Gso10g0284 10 3021287 3027453 GST
Gso19g1348 19 42185323 42190143 Gso2g1162 2 14537813 14543968 PCT
Gso3g1347 3 39367922 39372711 Gso2g1162 2 14537813 14543968 PCT
Gso2g1162 2 14537813 14543968 Gso19g1348 19 42185323 42190143 PCT
Gso2g1162 2 14537813 14543968 Gso3g1347 3 39367922 39372711 PCT