Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1322 ATGATGGAACCAAAGTGCACCTTAATAAACTGTCGCCGGCCGGAGTTCGTTCCGACCCCTCTGCCGGAGAGTCCTCGAGTGCCAATGGAGTTTCTGTCACGCTCATGGAGTGCCTCTGCCCTTGAGGTCTCCAAAGCTCTTGCACCTCATCACTCTAATTCCAACAACAACACTTCTTCCATTCCAGAAGAAACTTCTGTTTCTGCTCCCAACCACAACAGCAACAACTCTTTTTCTGAGGACTTCTCCACAACCATTTCTTCTAAGAATCAGTTCTCTTTTGCTTCCTCTGCCACCTCCCAGCTCGTCCTTGAACGCATTATGTCACAGTCCGCAAGAGAGGAAGTGTCTCCATTAACTTCTGGAAGATTATCTCACAGCAGCGAGCCTTTGAATGGTGGTGGTTCCTTAACCGGAACAGATAGCCCTCCGATTTCACCTTCAGATGAATTCGACGATGTTGTTAAGTTTTTTCGGGCAAACAATTCCATTCACCCTTTATTCAATGGTGGAAGAACCAGTGCAACCATTGGCAATGGCACGGCTTGCTCAGGACCTAAAACTGTTGGAAGATGGTTGAAGGAGCGAAGAGAAAAGAAGAAAGAAGAAAACAGAACCCACAATGCTCAGCTGCATGCCACTATTTCAGTGGCAGCAGTGGCTGCTGCTGTAGCAGCCATTGCGGCCGCAACAGCAGCTGGCTCATCTGCACCAAGCAAGGATGAGAAGATGGCAAAGACTGACATGGCTGTTGCTTCTGCAGCAACATTGGTTGCTGCACAGTGTGTAGAGGCTGCTGAAGCAATGGGGGCTGAGCGTGACCACCTTGCTTCAGTGGTTAGCTCTGCTGTGAATGTTCGTTCTCCTGATGATATCACTACTCTTACTGCTGCAGCTGCCACAGCTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATTGCTACAGTGACACCACTAGAGAGAGGCATAGGGGGGATTGGACTATGTGGTAAAAGTATTAACAGCAATACCAGCAATACCAGCACTAGTGACAGTGGGGAAATTTTCAATGGAGAAAATTTTCTAGGGTCCTGCAGCCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCTTCTTGGCGATGGTGAGAAGCGACGGTACTTTGGATTGAAGACAGACGCAAGGGGGATTGTGGAGTTTGAGTGTCGAAATCAAAGAGAATATGACCTCTGGACACAAGGGGTTTCAAGGCTTCTTTCCGTTGTTGCACAAAGACAAAACAGATATGGAAATTGA 1470 0.4701 MMEPKCTLINCRRPEFVPTPLPESPRVPMEFLSRSWSASALEVSKALAPHHSNSNNNTSSIPEETSVSAPNHNSNNSFSEDFSTTISSKNQFSFASSATSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGGRTSATIGNGTACSGPKTVGRWLKERREKKKEENRTHNAQLHATISVAAVAAAVAAIAAATAAGSSAPSKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSPDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTSNTSTSDSGEIFNGENFLGSCSQELLAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDICTDLPAWPGRHLLGDGEKRRYFGLKTDARGIVEFECRNQREYDLWTQGVSRLLSVVAQRQNRYGN* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1322 489 Pfam Plant pleckstrin homology-like region 375 480 IPR013666 -
Gso3g1322 489 PANTHER AUXIN CANALIZATION PROTEIN 2 489 - -
Gso3g1322 489 MobiDBLite consensus disorder prediction 49 82 - -
Gso3g1322 489 MobiDBLite consensus disorder prediction 113 145 - -
Gso3g1322 489 MobiDBLite consensus disorder prediction 113 150 - -
Gso3g1322 489 Pfam Auxin canalisation 22 328 IPR008546 -
Gso3g1322 489 PANTHER EXPRESSED PROTEIN 2 489 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1322 Gso-Chr3 39093738 39098191 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1322 - - gmx:100805743 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1321 19 41920350 41924236 Gso3g1322 3 39093738 39098191 GST
Gso3g1322 3 39093738 39098191 Gso2g1198 2 14945962 14949994 PCT
Gso3g1322 3 39093738 39098191 Gso10g0254 10 2632626 2637086 PCT
Gso2g1198 2 14945962 14949994 Gso3g1322 3 39093738 39098191 PCT
Gso10g0254 10 2632626 2637086 Gso3g1322 3 39093738 39098191 PCT