Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1321 ATGGAACCAAAGTGCACCATAAACTGTCGCCGGCCGGAGTTCGTTCCGACCCCTCTGCCGGAGAGTCCTCGTGTGCCCATGGAGTTTCTGTCACGCTCATGGAGTGCCTCAGCTCTTGAGGTCTCAAAAGCTCTTGCACCTCACTCTTCTTACAACAACTCCTCTTCCATTCCAGAACAAACTTCTGCTTCTGCTCCCAACCACAACAACAACCCTTTTTCTGAGGACTTGTCAACCATCTCTTCTAAGAATCAGTTCTCTTTTGCTTCCTCTGCCACCTCCCAGCTCGTCCTTGAACGCATTATGTCACAGTCCGCAAGAGAGGAAGTGTCTCCATTAACTTCTGGAAGATTATCTCACAGCAGCGAGCCTTTGAATGGTGGTGGTTCCTTAACCGGAACAGATAGCCCTCCGATTTCACCTTCAGATGAATTTGACGATGTTGTTAAGTTTTTTCGGGCAAACAATTCCATTCACCCATTATTCAATGGTGGAAGAGCCAGTGCAACTATTGGCAATGGCACGGCTTGCTCAGGACCTAAAACTGTTGGAAGATGGTTGAAGGACCGAAGAGAAAAGAAGAAAGAAGAAAACAGAACCCACAATGCTCAGTTGCATGCTACTATATCAGTGGCTGCAGTGGCTGCTGCTGTAGCAGCCATTGCGGCTGCAACAGCAGGCTCATCTGCACCAAGCAAGGATGAGAAGATGGCAAAGACTGACACGGCTGTTGCTTCTGCAGCAACATTGGTTGCTGCACAGTGTGTGGAGGCTGCTGAAGCAATGGGGGCTGAGCGTGATCACCTTGCTTCTGTGGTTAGCTCTGCTGTGAATGTCCGTTCTCATGATGATATCACTACTCTTACTGCTGCAGCTGCCACAGCTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATTGCCACTGTGACACCACTAGAAAGAGGCATAGGGGGAATTGGACTATGTGGTAAAAGTATTAACAGTAATACCAGTAATACCAGCAATACCAGCACTAGTGATAGTGGGGAAATTTTCAAAGGAGAAAATTTTCCAGGGTCCTGCAGCCAAGATCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATCTTCTTGATGATGGTGAAAAGCGACGGTACTTTGGATTGAAGACAGATGCAAGAGGGATTGTGGAGTTTGAGTGTCGAAATCAAAGAGAATATGACATTTGGACACAAGGGGTTTCAAGGCTTCTCTCTGTTGTTGCACAAAGACAAAGCAGATATGGAAATTGA 1458 0.4643 MEPKCTINCRRPEFVPTPLPESPRVPMEFLSRSWSASALEVSKALAPHSSYNNSSSIPEQTSASAPNHNNNPFSEDLSTISSKNQFSFASSATSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGGRASATIGNGTACSGPKTVGRWLKDRREKKKEENRTHNAQLHATISVAAVAAAVAAIAAATAGSSAPSKDEKMAKTDTAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTSNTSNTSTSDSGEIFKGENFPGSCSQDLLAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDICADLPAWPGRHLLDDGEKRRYFGLKTDARGIVEFECRNQREYDIWTQGVSRLLSVVAQRQSRYGN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1321 485 Pfam Plant pleckstrin homology-like region 371 476 IPR013666 -
Gso19g1321 485 MobiDBLite consensus disorder prediction 108 139 - -
Gso19g1321 485 PANTHER AUXIN CANALIZATION PROTEIN 1 485 - -
Gso19g1321 485 MobiDBLite consensus disorder prediction 108 143 - -
Gso19g1321 485 MobiDBLite consensus disorder prediction 48 77 - -
Gso19g1321 485 Pfam Auxin canalisation 20 321 IPR008546 -
Gso19g1321 485 PANTHER EXPRESSED PROTEIN 1 485 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1321 Gso-Chr19 41920350 41924236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1321 - - gmx:100793202 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1321 19 41920350 41924236 Gso3g1322 3 39093738 39098191 GST
Gso19g1321 19 41920350 41924236 Gso2g1198 2 14945962 14949994 PCT
Gso19g1321 19 41920350 41924236 Gso10g0254 10 2632626 2637086 PCT
Gso2g1198 2 14945962 14949994 Gso19g1321 19 41920350 41924236 PCT
Gso10g0254 10 2632626 2637086 Gso19g1321 19 41920350 41924236 PCT