Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1315 ATGGCACCAAGAAGAATTGAGATGCTGCTGAGCATGTCCCTTGTAATGGTTCTTTGGGGTGTCACATTGGCTCAATCTGATCAATCAAGTAGTTGCACCAATGTGTTCATAAGTCTTGCTCCATGCCTTGACTATGTTACAGGAAATGCCTCTATCCCTTCTTCTTCTTGTTGCTCTCAACTTGCCTTTGTGGTACGGTCACAGCCACTGTGCCTATGTGAGGTTGTTAATGGTGGTGCTTCATCTATTGCTGCAAGTTTCAACATCAATCAGACTAGGGCTTTGGCACTCCCTACTGCTTGCAATGTTCAGACACCTCCTATTACCTCCTGCAGTGCCTCGGCTTCTTCCTCACAAGGTGTTTCTGTTTCCTACTTTCCAAATTCCCCTTCAGGAATTGGATCTAGCACTGTTTCATCAACGATCGGAGGCAGTAGAAGTGTCGGTGCCTCATATCATGGAAATTCAAGTTCAACAAAATTGCCATGTTCTTTGCTTGTCATCATGTTTTTCCTTGCAACGACTTTGACTTTCACCTTCAAGACCATGACCTAG 555 0.4468 MAPRRIEMLLSMSLVMVLWGVTLAQSDQSSSCTNVFISLAPCLDYVTGNASIPSSSCCSQLAFVVRSQPLCLCEVVNGGASSIAASFNINQTRALALPTACNVQTPPITSCSASASSSQGVSVSYFPNSPSGIGSSTVSSTIGGSRSVGASYHGNSSSTKLPCSLLVIMFFLATTLTFTFKTMT* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1315 184 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 5 182 IPR043325 -
Gso3g1315 184 CDD AAI_LTSS 39 103 - -
Gso3g1315 184 PANTHER LIPID TRANSFER PROTEIN 5 182 - -
Gso3g1315 184 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 31 114 IPR036312 -
Gso3g1315 184 Gene3D - 29 109 IPR036312 -
Gso3g1315 184 PRINTS Plant phospholipid transfer protein signature 31 47 IPR000528 GO:0006869|GO:0008289
Gso3g1315 184 PRINTS Plant phospholipid transfer protein signature 52 66 IPR000528 GO:0006869|GO:0008289
Gso3g1315 184 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
Gso3g1315 184 Pfam Probable lipid transfer 15 111 IPR016140 -
Gso3g1315 184 SMART aai_6 32 111 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1315 Gso-Chr3 38996579 38998609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1315 5 180 Lipid Metabolism Gene Families AT3G22600 40.223 1.76e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1315 - - gmx:100801492 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1313 19 41824053 41826237 Gso3g1315 3 38996579 38998609 GST
Gso20g1174 20 41565070 41566346 Gso3g1315 3 38996579 38998609 PCT
Gso10g0245 10 2520421 2521996 Gso3g1315 3 38996579 38998609 PCT