Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0245 ATGGCTTTTAGAGGGTTTGCCTTGTGTCTAGTTGCGGTCATAGTGGCCACTATGTGGAGTCAAAATGCTGCCCAATCGGGTTGCACCAATACACTAACAAGCTTAAGCCCTTGTCTGAACTACATAATGGGAAGTTCTTCAACCCCATCAGCTTCATGCTGCTCACAGCTCTCAAGCATAGTCCAATCTTCACCACAGTGCCTTTGCTCCGTGCTCAATGGTGGAGGTTCCACTTTTGGAATTACCATTAACCAAACTCTTGCTCTGTCTCTCCCTGGCGCTTGTGAAGTACAAACTCCCCCTGTTAGCCAGTGCCAAGCGGGCAATGGACCAACAACTCCTTCGACTGCTCCAGTTGGTTCTCCTTCTGGTTCTTCAGCTGAATCACCTCAAGGCTCAATTACTCCTTCTGCTTTAGACTTTCCCTCAGGTGCAGGATCTAAAACTGTGCCATCAATAGACGGTGGTTCATCTGATGGAAGCGCTATTAAAGTCCCCTTCCACTTGGTGCTCTATCTTCTTGCCCTTGTGTCTTGTGCCTTAACCTTCACCAAGTTCTGA 561 0.4813 MAFRGFALCLVAVIVATMWSQNAAQSGCTNTLTSLSPCLNYIMGSSSTPSASCCSQLSSIVQSSPQCLCSVLNGGGSTFGITINQTLALSLPGACEVQTPPVSQCQAGNGPTTPSTAPVGSPSGSSAESPQGSITPSALDFPSGAGSKTVPSIDGGSSDGSAIKVPFHLVLYLLALVSCALTFTKF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0245 186 CDD AAI_LTSS 35 95 - -
Gso10g0245 186 MobiDBLite consensus disorder prediction 103 155 - -
Gso10g0245 186 MobiDBLite consensus disorder prediction 103 142 - -
Gso10g0245 186 SMART aai_6 28 105 IPR016140 -
Gso10g0245 186 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 182 IPR043325 -
Gso10g0245 186 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Gso10g0245 186 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Gso10g0245 186 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Gso10g0245 186 Pfam Probable lipid transfer 12 105 IPR016140 -
Gso10g0245 186 Gene3D - 25 105 IPR036312 -
Gso10g0245 186 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Gso10g0245 186 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0245 Gso-Chr10 2520421 2521996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0245 4 183 Acyl Lipid Metabolism Gene Families AT2G48130 45.946 4.27e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0245 - - gmx:100306151 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1174 20 41565070 41566346 Gso10g0245 10 2520421 2521996 GST
Gso10g0245 10 2520421 2521996 Gso19g1313 19 41824053 41826237 PCT
Gso10g0245 10 2520421 2521996 Gso3g1315 3 38996579 38998609 PCT