Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1313 ATGGCATCTAGAAGAATTGAGATGCTGCTGAGCATGTCCCTTGTGATGGCTCTTTGGGGTGTCACATTGGCTCAATCTGATCAATCAAGTTGCACCAATGTGTTCATAAGTCTTTCTCCCTGCCTTGACTATGTAACAGAAAATGCCTCTATCCCTTCTTCTTCTTGTTGCTCTCAACTTGCCTTTGTGGTGAGGTCACAGCCACTATGCCTATGTGAGGTTGTTAATGGTGGTGCATCATCTATTGCTGCAAGTTTCAACATCAATCAGACTCGAGCTTTGGCACTCCCCACTTCTTGCAACGTTCAGACACCTTCTATTAGCTCCTGCAGTGCCTCAGCTTCTTCCTCTCAAGGTGTTTCTGTTTCCAACTTTCCGAATTCCCCTTCAGGAATTGGATCTAACACTGTTTCATCAACGACCGGAGGCAGTAGAAGTGTCGGTGCCTCATATCATGGAAATTCAAGTTCAACAAAATTGCCATGTTCTTTGTTTGTCATGTTTGTCCTTGCAACGACTTTGACTTTCACATTCAAGACCACGATCTAG 549 0.4444 MASRRIEMLLSMSLVMALWGVTLAQSDQSSCTNVFISLSPCLDYVTENASIPSSSCCSQLAFVVRSQPLCLCEVVNGGASSIAASFNINQTRALALPTSCNVQTPSISSCSASASSSQGVSVSNFPNSPSGIGSNTVSSTTGGSRSVGASYHGNSSSTKLPCSLFVMFVLATTLTFTFKTTI* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1313 182 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Gso19g1313 182 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Gso19g1313 182 PRINTS Plant phospholipid transfer protein signature 87 104 IPR000528 GO:0006869|GO:0008289
Gso19g1313 182 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 113 IPR036312 -
Gso19g1313 182 Pfam Probable lipid transfer 20 110 IPR016140 -
Gso19g1313 182 PANTHER LIPID TRANSFER PROTEIN 5 180 - -
Gso19g1313 182 SMART aai_6 31 110 IPR016140 -
Gso19g1313 182 Gene3D - 28 115 IPR036312 -
Gso19g1313 182 CDD AAI_LTSS 38 102 - -
Gso19g1313 182 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 5 180 IPR043325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1313 Gso-Chr19 41824053 41826237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1313 5 142 Lipid Metabolism Gene Families AT3G22600 46.479 1.18e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1313 - - gmx:100789510 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1313 19 41824053 41826237 Gso3g1315 3 38996579 38998609 GST
Gso20g1174 20 41565070 41566346 Gso19g1313 19 41824053 41826237 PCT
Gso10g0245 10 2520421 2521996 Gso19g1313 19 41824053 41826237 PCT