Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1174 ATGGCAGCACAAGGGAAAATGGAGATGGGTGTGGTTTTGGTGGTAATGATCATTAGCATGATGTGTGTAGGGGCTAAGGCACAACAATCAAGTTGCACAAGTGCGTTGGTGAACCTGTCACCGTGCCTAAACTTCATAACGGGGAACTCCTCCACCCCTTCTTCTGGGTGCTGCACACAGCTTTCCAGTGTTGTCAGGTCACAACCACAGTGCCTGTGCCAGGTTCTTAACGGGGGAGGATCTTCATTGGGAGTTACAATCAACCAAACCCAGGCCCTGGCTTTGCCTGGGGCTTGCAATGTGCGGACCCCACCCATCACTCAGTGCAATGCTGCTTCACCAGTGGGATCTCCTTCTCCTAATTCGGATCCATCAGGAACCGGATCCACAAACGTGCCAACCACAGATAATGGCTCCTCTAGTGCAACTTCCGTCAAGTTATCGATTCCTCTGATGTTTTTTGTTCTTGCAGCAACATATGCTCCAACATTCGGAACACTGATTCTTTAG 510 0.5 MAAQGKMEMGVVLVVMIISMMCVGAKAQQSSCTSALVNLSPCLNFITGNSSTPSSGCCTQLSSVVRSQPQCLCQVLNGGGSSLGVTINQTQALALPGACNVRTPPITQCNAASPVGSPSPNSDPSGTGSTNVPTTDNGSSSATSVKLSIPLMFFVLAATYAPTFGTLIL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1174 169 PANTHER LIPID TRANSFER PROTEIN 10 161 - -
Gso20g1174 169 Gene3D - 29 109 IPR036312 -
Gso20g1174 169 Pfam Probable lipid transfer 14 109 IPR016140 -
Gso20g1174 169 MobiDBLite consensus disorder prediction 110 140 - -
Gso20g1174 169 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 31 110 IPR036312 -
Gso20g1174 169 PRINTS Plant phospholipid transfer protein signature 31 47 IPR000528 GO:0006869|GO:0008289
Gso20g1174 169 PRINTS Plant phospholipid transfer protein signature 52 66 IPR000528 GO:0006869|GO:0008289
Gso20g1174 169 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Gso20g1174 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 10 161 IPR043325 -
Gso20g1174 169 SMART aai_6 32 109 IPR016140 -
Gso20g1174 169 CDD AAI_LTSS 39 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1174 Gso-Chr20 41565070 41566346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1174 6 164 Lipid Metabolism Gene Families AT3G22600 50.296 1.46e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1174 - - gmx:100802241 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1174 20 41565070 41566346 Gso10g0245 10 2520421 2521996 GST
Gso20g1174 20 41565070 41566346 Gso19g1313 19 41824053 41826237 PCT
Gso20g1174 20 41565070 41566346 Gso3g1315 3 38996579 38998609 PCT