Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0516 ATGATGAAAGCCCTCACAAGCTCTTGTTCTAAGGCCATGGTCGAGACTCTAGGACCCTTCTCTCCCAGAGTTCCCCTTTGTGTTTCTGATAGACCCGAATTCTGCTTCACCCTTCGTTCCAAAAATGAGAAAAAGGGATGGAATTTATTGCTCCTGAAACTGGTTCGAAACAATGATCTTTACCCTGTTCATGCAGTGCCACCAAAGGACCAGGTGGACTTGGAGACTGTGGAGCCTCAGGCTCAACAAAGTGAACAAACAAATGAATCAAAGTTTGTTCATGTATCGTTCCAGTTAGAAAAGAGTTGTAATTTTGGTGAACAGTTTCTTATAGTTGGAGGTGATCCTGTGCTTGGTTCATGGGACCCTTTAGAGGCATTACCCATGACATGGTCTGAAGGACATGTATGGGCTGTGGAGCTGGATATGCCTGCTGGACAAACATTCCAGTATAAGTTCATACTGGAAGGAGAAGGGGGGGATATTATTTGGCAGCCAGGGTCGGATCGATTGATCCACACTTGGGAAACTAAGAATAGAATAGTTGTTCTCGAAGATTGGGAGAATGTAGAACTTCAGAAAATAACAGAGGAAGATCAACTTGCCGAGCCAAATGAGGAACCCCAGGTTGACTTTGAAGTGCCAACTTTAGCTGAATTTCTTAATAATCCTCAAGAAGAACTGGATTCCAAAGCATCGGAAATATCGTCTGTAGAAGATACCCAAATTCAGTCTGTGGAGGAACCACTTGCTGAAACAGTTCGGCAACAAATCACTGAGGAAGATCAACTTGCCGAGCCAAATGAGGAACCCCAAGTTGACTTTGAAGTGCCAACTTTAGCTGAATTTCTTAATAATCCTCAAGAAGAACTGGATTCCAAAGCATTGGAAATATCATCTGTAGAAGATACCCAAATTCATGCTGTGGAGGAACCACTTGCTGAAACAGTCCGGCAACAAATCACTGGTAATAGTATTTCTTCCTCAATGGAAAAGCCAATGTCTATTGTTGTAGAAAACATAAGTTCTTCGGGGGATCTCATCAGCAGTATAAGCCACAAAAGTAATAAAAAGAGTATACTTCAACCAAGTGAAGAATCTGCAGATAGTCCAGGAAATGATGATATAATACATGATCTTGGTCAAAATGGAAATCCTGCATCACTGGAGAACCAGGAAAAGACAATTGTGGAAAGCAGCTTATTTGATCTTGAAGAAGGTCCTGTTCTTGTACCTGGCTTACCAATACCACCAACTGAGCCAACTGATGAAGCAGACCAAGGTGAAGTTCAAGAAACGACTAAAAAGGACACTTCAGTTGAAGCTTTTGAAACTCAGGATCAGAACATAGCTAAGTTCAGTAAGGAGGAAGAAACTGATGATGCCATACCCCAAGAGATAAATGCAACCATCAATAATGGACCAGAGCTGCTTTACAATAAACAACATGAAGAGTCTCATTTGTCCCCAGAAATGGAAGACTGGCCAAACTACGAGCCAGATGATGACAATACCGTGCAAAATGACATCAAATGGGGCCAAGACACGGTAAACAAGTTTCTAACAAAACTTGGATTCTTTTGA 1584 0.4186 MMKALTSSCSKAMVETLGPFSPRVPLCVSDRPEFCFTLRSKNEKKGWNLLLLKLVRNNDLYPVHAVPPKDQVDLETVEPQAQQSEQTNESKFVHVSFQLEKSCNFGEQFLIVGGDPVLGSWDPLEALPMTWSEGHVWAVELDMPAGQTFQYKFILEGEGGDIIWQPGSDRLIHTWETKNRIVVLEDWENVELQKITEEDQLAEPNEEPQVDFEVPTLAEFLNNPQEELDSKASEISSVEDTQIQSVEEPLAETVRQQITEEDQLAEPNEEPQVDFEVPTLAEFLNNPQEELDSKALEISSVEDTQIHAVEEPLAETVRQQITGNSISSSMEKPMSIVVENISSSGDLISSISHKSNKKSILQPSEESADSPGNDDIIHDLGQNGNPASLENQEKTIVESSLFDLEEGPVLVPGLPIPPTEPTDEADQGEVQETTKKDTSVEAFETQDQNIAKFSKEEETDDAIPQEINATINNGPELLYNKQHEESHLSPEMEDWPNYEPDDDNTVQNDIKWGQDTVNKFLTKLGFF* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0516 527 Gene3D Immunoglobulins 90 188 IPR013783 -
Gso3g0516 527 MobiDBLite consensus disorder prediction 407 437 - -
Gso3g0516 527 MobiDBLite consensus disorder prediction 353 369 - -
Gso3g0516 527 PANTHER BLR6771 PROTEIN 1 261 - -
Gso3g0516 527 PANTHER BLR6771 PROTEIN 256 477 - -
Gso3g0516 527 CDD CBM20 95 187 - -
Gso3g0516 527 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 87 189 IPR002044 GO:2001070
Gso3g0516 527 SUPERFAMILY Starch-binding domain-like 90 186 IPR013784 GO:0030246
Gso3g0516 527 MobiDBLite consensus disorder prediction 353 388 - -
Gso3g0516 527 Pfam Starch binding domain 93 179 IPR002044 GO:2001070
Gso3g0516 527 SMART CBM_20_2 92 184 IPR002044 GO:2001070
Gso3g0516 527 MobiDBLite consensus disorder prediction 483 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0516 Gso-Chr3 10334940 10339631 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0516 - - gmx:100780774 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0971 1 39709947 39714363 Gso3g0516 3 10334940 10339631 GST
Gso18g1601 18 47502089 47503371 Gso3g0516 3 10334940 10339631 PCT
Gso7g1251 7 17823179 17824473 Gso3g0516 3 10334940 10339631 PCT
Gso3g0516 3 10334940 10339631 Gso18g1601 18 47502089 47503371 PCT
Gso3g0516 3 10334940 10339631 Gso7g1251 7 17823179 17824473 PCT