Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0971 ATGAAAGCCCTCACAAGCTCTTGTTCCAAGACCGTCGTCGACACCCTAGGACCCTTTTCTCCCAGAGTTTGCCTTCGTGTTTCTTATAGACCCGAATTCTGCTTCACCCTTCGTTCCAAAAATGAGAAAAAGGGTTGCAATTCATTGCTCCTGAAACTGGTTCGGAACAAGGGTGTTGTTTACCCGGTTCATGCAGTGCCACCAAAGAACCAGGTGGACTTGGATACTGCGGAGCCTCAAGCTCAACAAAGTGAACAAACAAATGAATCAAAGTTTGTTCGTGTATCTTTTCAGTTAGAAAAGAATTGTAACTTCGGTGAACAGTTTCTTATCGTTGGAGATGATCCTGTGCTTGGTTCATGGGACCCTTTAGAAGCATTACCCATGACATGGTTTGAAGGACATGTATGGGCCGTGGAGCTGGATATGCCTGCTGGAAAGTCATTCCAGTTCAAGTTCATACTGAAAGGAAAAGGGGGGGATATTATTTGGCAGCCAGGGTTGGATCGAATGATCCACACTTGGGAAACTATGAACAGAATAATTGTTCTTGAAGATTGGGAGAATGCAGAACTTCAGAAAATAATAGAGGAAGATCAACTTGCTGAGCCAAATGAGGAACCCCAGGTCGACTTAGAAGTGCCGACTTTAGCTGAAACTTTGGAGAATCCTCAAGAGGAACTGGATTCCAATGCATCCGAAATATCAGCTGTTGAAGATACCCAAATTCATGCAGAGGAGAAACCACTTGCTGAACCAGTCATGCAACAAAACACTGATACTATTTCTTCCTCTATCGAAAAGCCAATGGCTATTGTTGCAGAAAATATAAGTTCTTCGGAAGATCTCATCAACAGTACAAGCCATAAAAGTAATAAAAAGAATATAATACTTCAACCAAAAGAAGAATCTGCAGATAGTCCAGGAAACGATGATATAATACATGATCTTGGACACAATGGAAATGCTGCGTCACTCGAAAATCAGGAAAAGACAATTGTGGAAAGCAGCTTATTTGATCTTGAAGGAGGTCCTGTTCTTGTACCTGGCTTAATAATAGAACCAACTGAGCCAACTGATCAAGCGGGTCAAAGTGAAGTTCAAGAGATGACTAACACGGACACTTCAGTTGGAGCTTTTGAAACTCAGGATCAGAACATACCCGAGTTCAGTAAGGAGCAAGAAACTGATGATGCCACACCCCGAGAGATAAATGCAGACATCAATAATGGGCAAGAGCTGCTTTACAATGAACAAGAGTCTCATTTGTCCCCAGAAATGGAAGGCATGCCAAACTACGAGCAAGATGATGACAATCCCTTGCAAAATGACATCAAATGGGGCCAAGAAACGGTGAAGAAGTTTCTAACAAAACTTGGATTCCTTTGA 1389 0.4226 MKALTSSCSKTVVDTLGPFSPRVCLRVSYRPEFCFTLRSKNEKKGCNSLLLKLVRNKGVVYPVHAVPPKNQVDLDTAEPQAQQSEQTNESKFVRVSFQLEKNCNFGEQFLIVGDDPVLGSWDPLEALPMTWFEGHVWAVELDMPAGKSFQFKFILKGKGGDIIWQPGLDRMIHTWETMNRIIVLEDWENAELQKIIEEDQLAEPNEEPQVDLEVPTLAETLENPQEELDSNASEISAVEDTQIHAEEKPLAEPVMQQNTDTISSSIEKPMAIVAENISSSEDLINSTSHKSNKKNIILQPKEESADSPGNDDIIHDLGHNGNAASLENQEKTIVESSLFDLEGGPVLVPGLIIEPTEPTDQAGQSEVQEMTNTDTSVGAFETQDQNIPEFSKEQETDDATPREINADINNGQELLYNEQESHLSPEMEGMPNYEQDDDNPLQNDIKWGQETVKKFLTKLGFL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0971 462 PANTHER BLR6771 PROTEIN 1 413 - -
Gso1g0971 462 SUPERFAMILY Starch-binding domain-like 90 185 IPR013784 GO:0030246
Gso1g0971 462 MobiDBLite consensus disorder prediction 75 89 - -
Gso1g0971 462 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 87 189 IPR002044 GO:2001070
Gso1g0971 462 MobiDBLite consensus disorder prediction 420 443 - -
Gso1g0971 462 SMART CBM_20_2 92 184 IPR002044 GO:2001070
Gso1g0971 462 Pfam Starch binding domain 93 178 IPR002044 GO:2001070
Gso1g0971 462 MobiDBLite consensus disorder prediction 70 89 - -
Gso1g0971 462 CDD CBM20 94 187 - -
Gso1g0971 462 Gene3D Immunoglobulins 90 188 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0971 Gso-Chr1 39709947 39714363 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0971 - - gmx:100784126 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0971 1 39709947 39714363 Gso3g0516 3 10334940 10339631 GST
Gso18g1601 18 47502089 47503371 Gso1g0971 1 39709947 39714363 PCT
Gso7g1251 7 17823179 17824473 Gso1g0971 1 39709947 39714363 PCT
Gso1g0971 1 39709947 39714363 Gso18g1601 18 47502089 47503371 PCT
Gso1g0971 1 39709947 39714363 Gso7g1251 7 17823179 17824473 PCT