Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2540 ATGATGAGAAGGCACTCCCTTGTGACTGCATCACCAAAACAAGTGTCCCTCTTCTTTGTTGGCCACAAAAGCAACCCAACAACAATTCATCCTCACACTCACACCCTTCTGACTCCATCACCCAAACAAGACCCACAAAACCATAATCAGTGGTGGGGCCACCCCAAAACCATCAAACCCAGTTTCAATCACAGTAGGATCAGGTTCAACACCTTGCACACTGGTTCCACCGAAGAACAAGTTGAAACGGGTGAGGTTGAAGTCGATGTGTGGACGAAGATGCAGGAAGAAGCTAAACTCGATGTCACCGAGGAACCCATTTTGTCTAATTACTACAACACTTCCATTCTCTCTCACAAGACACTTGAAACCGCGTTGGCCAATCACCTTGCAATCAACCTCAGCAGCACAAGCCTTCCAAGCAGCACACTTTCTGATCTTTTTGTGACGGTTTTGGAGACCGACCAAGCCATCATGGATGCTGTGAAGTGTGACCTGAGAGCGGTGAAGGAGAGAGACCCTGCTTGCATAAGCCACGTGCACTGCTTCTTGAATTTCAAAGGCTTTCTGGCGTGCCAGGCTCACAGGGTGGCTCACAAGCTGTGGCTTCAGGGAAGGAAGATTCTTGCTGTGATGATTCAGAACCGGGTTTCGGAGATTTTCGCGGTGGATGTTCATCCAGGGGCTAGGATTGGAAGTGGGATTTTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAGACTGCTGTCATAGGGAACAATGTGTCAATTCTGCATAGTGTCACTTTGGGAGGGACTGGTAAGGTTTCTGGGGATAGGCACCCAAAGATTGGTGATGGGGTGCTGATAGGTGCTGGAACTTGTATCTTGGGGAATATTAAGGTTGGTGATGGGGCTAAGATTGGTGCTGGTTCTGTGGTTATTAAGGATGTTCCTCCAAGGACTACTGTTGTGGGGAACCCGGCTAAGTTGGTAGGAGGGAAGAACAACCCTGTTAAGTTGGATAAGATTCCTAGCTTCACCATGGACCATACTTCACATATTGCTGACTTTTATGATTATTGTGTTTAG 1071 0.4799 MMRRHSLVTASPKQVSLFFVGHKSNPTTIHPHTHTLLTPSPKQDPQNHNQWWGHPKTIKPSFNHSRIRFNTLHTGSTEEQVETGEVEVDVWTKMQEEAKLDVTEEPILSNYYNTSILSHKTLETALANHLAINLSSTSLPSSTLSDLFVTVLETDQAIMDAVKCDLRAVKERDPACISHVHCFLNFKGFLACQAHRVAHKLWLQGRKILAVMIQNRVSEIFAVDVHPGARIGSGILLDHATGIVVGETAVIGNNVSILHSVTLGGTGKVSGDRHPKIGDGVLIGAGTCILGNIKVGDGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPVKLDKIPSFTMDHTSHIADFYDYCV* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2540 356 PANTHER SERINE ACETYLTRANSFERASE 57 355 - -
Gso2g2540 356 CDD LbH_SAT 221 321 IPR045304 -
Gso2g2540 356 Pfam Bacterial transferase hexapeptide (six repeats) 274 308 IPR001451 -
Gso2g2540 356 SMART SATase_N_2_a 90 194 IPR010493 GO:0005737|GO:0006535|GO:0009001
Gso2g2540 356 Gene3D Hexapeptide repeat proteins 224 344 - -
Gso2g2540 356 Gene3D serine acetyltransferase, domain 1 73 223 IPR042122 -
Gso2g2540 356 PANTHER SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC 57 355 - -
Gso2g2540 356 Pfam Serine acetyltransferase, N-terminal 90 194 IPR010493 GO:0005737|GO:0006535|GO:0009001
Gso2g2540 356 SUPERFAMILY Trimeric LpxA-like enzymes 90 326 IPR011004 -
Gso2g2540 356 TIGRFAM cysE: serine O-acetyltransferase 162 323 IPR005881 GO:0005737|GO:0006535|GO:0009001
Gso2g2540 356 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 283 311 IPR018357 GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2540 Gso-Chr2 49764467 49766023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2540 90 352 Miscellaneous Gene Families AT2G17640 52.788 9.55e-91 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2540 K00640 - gmx:100820316 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0127 14 1118475 1120025 Gso2g2540 2 49764467 49766023 GST
Gso18g0676 18 7617045 7618605 Gso2g2540 2 49764467 49766023 PCT
Gso8g2710 8 44761912 44763625 Gso2g2540 2 49764467 49766023 PCT
Gso2g2540 2 49764467 49766023 Gso18g0676 18 7617045 7618605 PCT
Gso2g2540 2 49764467 49766023 Gso8g2710 8 44761912 44763625 PCT