Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0676 ATGAATGTTCTGGCTCTAGGGCGCTTCCTCACTTCCCCCTTATATAAGACTTCCCCTCTCACTCCCTCCCCAATCCAATTCACACCCATTTTTCTTCATCCCCCAAAGTTTCAATCTTTGTATTCAATTCACCCTTTCTCTCTCTCCATGGCCACTTGTGTTGATGCCCCAACCCCTCTTTCTCGGAAGCCTAGCGGGTCCCAATCCGATGATCGTTCCTTCAATTACATGAAATTCTGCCGACCCACTTTCTCTGATCGCGTTCCCTGCATACCCATTTGCAAGAATCGTGACACTGCCTTCACACGCGTGGAGGAGTTTGACACATGTGTGGAGGATAATGATGATATTGAGGTTGAGGTTGTGGAGGGTGTTGATCTTTGGTTGAAGATTCAAGAGGAGGCAAGGTTAGATGTTGATCAAGAACCAATTTTATCCAGCTACTATTTCAGTTCCATTTTGTCTCACAAATCTTTGGAGAGTGCCTTGGCCAACCACCTCTCCACAAATTTGAGCAGCTTGAGCCTTCCAAGCAGCACCCTTTTTGACCTTTTCATGGGTGTTTTGGTTGATGATGGAGATGATGACATCGTAGGTGCTGTGAAGGATGATTTGATAGCTGTTAAGGAGAGGGACCCTGCTTGCATAAGTTATGTGCATTGCTTGCTGAATTTCAAGGGTTTTTTGGCATGTCAGGCTCATAGGATTGCTCACAAATTGTGGCTTCAAGGGAGGAAGGTCTTGGCGCTGTTGATTCAGAATAGGGTGTCTGAGGTTTTTGCTGTGGATATTCACCCTGGTGCCAAAATTGGACGTGGGATTTTGCTGGATCATGCAACAGGACTTGTTGTGGGGGAGACTGCAGTTATTGGGAATAATGTGTCAATTTTGCATAATGTGACATTGGGAGGGACTGGTAAGGCAAGTGGGGATAGACACCCTAAGATTGGTGATGGGGTGTTGATAGGTGCAGGGACTTGTATTTTGGGGAACATTAAGATTGGTGATGGAGCTAAGATTGGTGCTTGTTCTGTTGTGTTGAAGGAAGTGCCACCAAGGACTACTGCTGTTGGGAACCCTGCTAGGTTGGTTGGAGGGAAGGATAACCCTATTAAATTGGATAAGATGCCTAGTTTTACCATGGACCATACTTCATGGTCTGATTATGTTATATAG 1176 0.4558 MNVLALGRFLTSPLYKTSPLTPSPIQFTPIFLHPPKFQSLYSIHPFSLSMATCVDAPTPLSRKPSGSQSDDRSFNYMKFCRPTFSDRVPCIPICKNRDTAFTRVEEFDTCVEDNDDIEVEVVEGVDLWLKIQEEARLDVDQEPILSSYYFSSILSHKSLESALANHLSTNLSSLSLPSSTLFDLFMGVLVDDGDDDIVGAVKDDLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHKLWLQGRKVLALLIQNRVSEVFAVDIHPGAKIGRGILLDHATGLVVGETAVIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGACSVVLKEVPPRTTAVGNPARLVGGKDNPIKLDKMPSFTMDHTSWSDYVI* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0676 391 PANTHER SERINE ACETYLTRANSFERASE 50 391 - -
Gso18g0676 391 Pfam Serine acetyltransferase, N-terminal 127 233 IPR010493 GO:0005737|GO:0006535|GO:0009001
Gso18g0676 391 PANTHER SERINE ACETYLTRANSFERASE 50 391 - -
Gso18g0676 391 SMART SATase_N_2_a 127 233 IPR010493 GO:0005737|GO:0006535|GO:0009001
Gso18g0676 391 Pfam Bacterial transferase hexapeptide (six repeats) 313 347 IPR001451 -
Gso18g0676 391 Gene3D serine acetyltransferase, domain 1 112 262 IPR042122 -
Gso18g0676 391 SUPERFAMILY Trimeric LpxA-like enzymes 124 365 IPR011004 -
Gso18g0676 391 Gene3D Hexapeptide repeat proteins 263 382 - -
Gso18g0676 391 TIGRFAM cysE: serine O-acetyltransferase 201 362 IPR005881 GO:0005737|GO:0006535|GO:0009001
Gso18g0676 391 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 322 350 IPR018357 GO:0016740
Gso18g0676 391 CDD LbH_SAT 260 360 IPR045304 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0676 Gso-Chr18 7617045 7618605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0676 127 389 Miscellaneous Gene Families AT2G17640 52.471 1.11e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0676 K00640 - gmx:606507 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0676 18 7617045 7618605 Gso8g2710 8 44761912 44763625 GST
Gso18g0676 18 7617045 7618605 Gso14g0127 14 1118475 1120025 PCT
Gso18g0676 18 7617045 7618605 Gso2g2540 2 49764467 49766023 PCT
Gso14g0127 14 1118475 1120025 Gso18g0676 18 7617045 7618605 PCT
Gso2g2540 2 49764467 49766023 Gso18g0676 18 7617045 7618605 PCT