Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2172 ATGTGTGCATACCCTTTGTCTTGTACCCCAGTCCACACGTCTTTCTTTTCCTTCCCTTTAAATTCTCCCATTCTCTTTCTCTCATACCCATCTCCATTTCCTCTTCACAAAACTCACAGTTTCCAATTCACCAAACTCACAATGGTTGATCTAGATTGGCAAACAAAGATGGTTCACTCCAACATCATGCCTCCAATGTCCCCCAAACTCTCTCTCCCGGATCATAACATTCCAATCCCAACTTTGCAACTCCCCCTTCGCCAAAACGACATCACCGCAGCGTCGTCTCCTATCTGCGCTGCATACGACAACTACCTTCGTCTCCCTGAGCTCAGAGCCCTCTGGGCCTCCAAGGACTTCCCCAATTGGGCCAACGAGCCCATCTTAAAGCCCGCCTTACACGCCCTCGAAATCACCTTCCGCTTACTCGCAACCGTTTTCTCCGACCCGAGACCGTACATCAACAAACGCGAGTGGACCCGACGCGTCGAGTCTCTCGCCACGGCCCAAATCCAGATCATAGCCATGTTATGCGAAGACGAAGAAGAAAACCCCGAGACACGTGGCAAGGCACCCGTGACTGACATTAACGGCTTTACCGGTCAAAGCAGAAGCTACAGCGAGGAAAGCCTGCTCCCGCGCCTCGCCACGTGGCAGAAATCCAAGGACGTGGCGCAGAGGATTCTCAATTCGGTGGACTACGAGATGGGGAGGTGCACCTACACCTTAGGCTTAGGAGAGGCGAATATCGCGGGAAAGAAGATATTTCTCTTCGACGCGGTTTGCAGGCCGAGGGAGATTCACTCGTTGGAGACGACGCCGTTTGATGATTACGTGGGGAACCACGAGAACAAGACGCTGCACGCCACGCAGCAGATCGCCGAGTGTTGGACGCGCTCGGTGAAGAAGCTGCTGGAGAGAGTAACGGAGTCGGTGGAGAAAAAGGCGTTGGAGAAGGCCGCGAGTGAGTGCCATGCGGTGGAGCGGATCTGGAAGTTGTTAACGGAGGTTGGGGACATGAACCTCATGATGGATCCAGAGGATTTCTTGAGGCTGAAGAAGGAGTTAGGGATGATGAGAACTGCGGGCGAAACGGTGGCGTTTTGCTTCAGGTCGAGGGAGCTTGTGGAGGTGGCGAGGGTGTGTAGGGATCTGAGGGAGAAGGTGCCGGAGATATTGGAGGTGGAGGTGGACCCCAAGGGTGGGCCCGGGATGATGGAGGCGGCGATGAAGGTTTACTCGGAGAAAGAGAAAGGGAAGGTTCATGTTTTGCAGGGGATGCAGGGGATTGAGGTGGCGATGAAGAGGTTCTTCTACGCGTATAAGCAGGTTGTGACGGTTATGATGGGGAGCTCCGAGGCCGATAATGGGTTCACCAAGATATTCCTTGAACCCACTTATTTCCCTAGCTTGGATGCTGCCAAGACCTTTCTTGGTTATTATAACCAAAATTAA 1455 0.5313 MCAYPLSCTPVHTSFFSFPLNSPILFLSYPSPFPLHKTHSFQFTKLTMVDLDWQTKMVHSNIMPPMSPKLSLPDHNIPIPTLQLPLRQNDITAASSPICAAYDNYLRLPELRALWASKDFPNWANEPILKPALHALEITFRLLATVFSDPRPYINKREWTRRVESLATAQIQIIAMLCEDEEENPETRGKAPVTDINGFTGQSRSYSEESLLPRLATWQKSKDVAQRILNSVDYEMGRCTYTLGLGEANIAGKKIFLFDAVCRPREIHSLETTPFDDYVGNHENKTLHATQQIAECWTRSVKKLLERVTESVEKKALEKAASECHAVERIWKLLTEVGDMNLMMDPEDFLRLKKELGMMRTAGETVAFCFRSRELVEVARVCRDLREKVPEILEVEVDPKGGPGMMEAAMKVYSEKEKGKVHVLQGMQGIEVAMKRFFYAYKQVVTVMMGSSEADNGFTKIFLEPTYFPSLDAAKTFLGYYNQN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2172 484 Pfam Hs1pro-1 N-terminus 48 233 IPR009869 GO:0006952
Gso2g2172 484 Pfam Hs1pro-1 protein C-terminus 236 483 IPR009743 -
Gso2g2172 484 Gene3D - 262 368 - -
Gso2g2172 484 PANTHER NEMATODE RESISTANCE HSPRO2-LIKE PROTEIN 48 484 - -
Gso2g2172 484 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 48 484 IPR038759 -
Gso2g2172 484 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 265 478 IPR037217 GO:0019441|GO:0020037|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2172 Gso-Chr2 46398493 46400062 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2172 - - gmx:100174967 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0519 14 4966025 4967585 Gso2g2172 2 46398493 46400062 GST
Gso18g0260 18 2283021 2284731 Gso2g2172 2 46398493 46400062 PCT
Gso13g1358 13 29081687 29083377 Gso2g2172 2 46398493 46400062 PCT
Gso2g2172 2 46398493 46400062 Gso18g0260 18 2283021 2284731 PCT
Gso2g2172 2 46398493 46400062 Gso13g1358 13 29081687 29083377 PCT