Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0260 ATGCTCCCCAACCCAACATTCCCATCCACTCCTCAATTTCCTCTTTCTTTCAAACTTCACATGCCACAACTCTTCTCCTTCATCTCATATAAATACCCTTCCTTCTTCCCTCTTCCCTCTTCAATTCATTCCACACAACAAAAACACCAATTCTCCACCCTCTCATTGAAAAAAAACAACCAAACAAAAAAATCAATCATTTTATTTTATTTTTCTACGAAAATGGTTGATTTACATTGGAAATCAAAGATGCCTAGTTCCAAAACACCAAAACTCTCTCTCTCCGACAACAAGTCCTTACCCTCTTTGCAACTACCCTTCCGCACCACAGATATCTCTCCCGCCGCTCCTTCCGTTTGCGCCGCTTACGACTACTATCTCCGTCTTCCTCAACTCAGAAAGCTTTGGAACTCCACTGATTTTCCTAATTGGAACAACGAACCGATTCTAAAACCAATTTTGCAAGCTCTCGAAATCACGTTCCGCTTTCTTTCCATTGTTCTCTCCGATCCCAGACCTTACTCCAACCACAGAGAATGGACTCGCCGGATAGAGTCTCTCATCACGCATCAAATTGAAATCATTGCCATACTTTGTGAAGATGAGGAACAAAATTCCGACACACGTGGCACTGCACCAACCGCTGATCTCAGCAGCAGCAATAGCAGCGTGAGCAGAAGCTACAGCGAGGCGAGCCTGCTTCCTCGGCTTGCCACGTGGTACAAATCCAGGGACGTGGCGCAGAGGATCCTTCTCTCCGTGGAATGCCAAATGAGGAGGTGCTCCTACACGCTTGGTTTGGGCGAGCCGAACCTAGCGGGGAAGCCGAGCCTGCTCTACGACCTCGTGTGCAAGCCGAATGAGATCCACGCACTGAAGACGACGCCGTACGACGAGCGCGTGGAGAACCATGAGAACCACGCGGTGCACGCCACGCACCAGATCGCGGAGTCGTGGATTCACGCGTCGCGGAAGGTTCTGGAGAGAATCGCGGACGCGGTGCTCTCCAGAACCTTCCAGAAAGCAGCAGAGGACTGCTACGCCGTGGAGAGGATCTGGAAGCTTCTCGCGGAGGTGGAGGACCTCCACCTGATGATGGATCCGGACGATTTCTTGAGGCTAAAGAATCAACTCTCGGTGAAATCCTCGAGCGGCGAAACGGCATCGTTCTGCTTCAGATCGAATGAGTTAGTGGAACTGACGAAGATGTGCAGAGATCTGAGGCACAAGGTGCCGGAGATATTGGAGGTGGAGGTGGATCCGAAGGGAGGACCGAGGATTCAAGAGGCGGCGATGAAGCTCTACGTTTCGAAGAGCGAGTTCGAGAAGGTTCACTTGTTGCAGGCGATGCAGGCGATTGAGGCGGCGATGAAGAGATTCTTCTACGCGTATAAGCAGGTGTTGGCGGTGGTGATGGGAAGCTCAGAGGCTAACGGTAACCGAGTTGGGTTGAGTTGCGACTCGGCTGACTCGTTGACTCAGATTTTCCTTGAACCGACGTATTTTCCAAGCTTGGATGCCGCCAAGACTTTTCTTGGATACCTGTGGGATAATAACGATAATAACAAATGGATATGA 1578 0.5025 MLPNPTFPSTPQFPLSFKLHMPQLFSFISYKYPSFFPLPSSIHSTQQKHQFSTLSLKKNNQTKKSIILFYFSTKMVDLHWKSKMPSSKTPKLSLSDNKSLPSLQLPFRTTDISPAAPSVCAAYDYYLRLPQLRKLWNSTDFPNWNNEPILKPILQALEITFRFLSIVLSDPRPYSNHREWTRRIESLITHQIEIIAILCEDEEQNSDTRGTAPTADLSSSNSSVSRSYSEASLLPRLATWYKSRDVAQRILLSVECQMRRCSYTLGLGEPNLAGKPSLLYDLVCKPNEIHALKTTPYDERVENHENHAVHATHQIAESWIHASRKVLERIADAVLSRTFQKAAEDCYAVERIWKLLAEVEDLHLMMDPDDFLRLKNQLSVKSSSGETASFCFRSNELVELTKMCRDLRHKVPEILEVEVDPKGGPRIQEAAMKLYVSKSEFEKVHLLQAMQAIEAAMKRFFYAYKQVLAVVMGSSEANGNRVGLSCDSADSLTQIFLEPTYFPSLDAAKTFLGYLWDNNDNNKWI* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0260 525 Gene3D - 278 511 - -
Gso18g0260 525 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 75 523 IPR038759 -
Gso18g0260 525 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 284 512 IPR037217 GO:0019441|GO:0020037|GO:0046872
Gso18g0260 525 Pfam Hs1pro-1 N-terminus 75 255 IPR009869 GO:0006952
Gso18g0260 525 Pfam Hs1pro-1 protein C-terminus 258 518 IPR009743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0260 Gso-Chr18 2283021 2284731 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0260 - - gsj:114396435 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0260 18 2283021 2284731 Gso18g0260 18 2283021 2284731 ECH
Gso18g0260 18 2283021 2284731 Gso13g1358 13 29081687 29083377 GST
Gso18g0260 18 2283021 2284731 Gso14g0519 14 4966025 4967585 PCT
Gso18g0260 18 2283021 2284731 Gso2g2172 2 46398493 46400062 PCT
Gso14g0519 14 4966025 4967585 Gso18g0260 18 2283021 2284731 PCT
Gso2g2172 2 46398493 46400062 Gso18g0260 18 2283021 2284731 PCT