Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1682 ATGCTTTTGAGTTGTTTTTCTTTTCCCCCTTCCAAAATGCCTTCTTCTCACATTCTTTTCTCCCTCCTCTCTTTCCTCTCCATCATAATCACTACCTTCTCTTCATCCACACCCAACACCATCACTCTCCATCTCTCTCCCTTATTCACCAACCACCCCTCTTCAAGTTCACACCCATTCCACACCCTCAAACTCGCCGTCTCAACATCCATCACAAGAGCCCACCACCTTAAAAACCACAAACCAAACAAGTCACTCGAAACCCCAGTTCACCCCAAAACCTACGGAGGCTACTCAATAGACCTCGAATTCGGAACCCCGTCACAAACCTTCCCCTTTGTTCTCGACACCGGTAGCACCCTCGTCTGGCTCCCGTGCTCCTCTCACTACCTCTGCTCCAAATGCAACTCCTTCTCAAACACGCCAAAGTTCATCCCTAAAAACTCGTCTTCTTCAAAGTTCGTTGGCTGCACCAACCCTAAATGCGCCTGGGTCTTCGGCCCAGACGTTAAATCCCATTGCTGCAGGCAAGACAAAGCTGCTTTTAATAATTGTTCCCAAACATGCCCTGCCTACACCGTCCAGTACGGCCTCGGCTCCACCGCGGGTTTTCTCTTATCCGAAAATCTCAACTTTCCCACCAAAAAATACTCCGATTTTCTCCTCGGCTGCTCCGTCGTCTCCGTCTACCAGCCGGCCGGAATCGCGGGGTTCGGTCGGGGAGAAGAGTCGCTGCCGTCGCAGATGAACCTCACGAGATTCTCTTACTGCTTACTCTCTCACCAGTTCGACGATTCCGCAACAATAACCAGCAACCTCGTCTTGGAAACCGCTTCCTCACGCGACGGAAAAACCAACGGCGTCAGCTACACGCCGTTTCTGAAAAACCCTACCACGAAGAAAAACCCCGCGTTCGGCGCGTACTATTACATCACTCTTAAAAGGATCGTAGTAGGAGAAAAGCGCGTGAGGGTTCCGAGGAGGCTGTTGGAGCCCAACGTCGACGGCGATGGTGGGTTCATCGTTGACTCCGGGTCAACGTTCACGTTCATGGAGAGACCGATTTTCGATCTGGTGGCGCAGGAGTTTGCAAAGCAGGTGAGTTACACGCGCGCGAGGGAGGCTGAGAAGCAATTTGGGTTGAGTCCGTGTTTTGTGTTGGCGGGTGGTGCTGAAACGGCGTCGTTTCCCGAGCTGAGGTTTGAGTTCAGGGGTGGCGCGAAGATGAGGCTGCCGGTGGCGAATTATTTCTCGCTGGTGGGGAAAGGTGACGTGGCGTGCTTGACGATTGTGTCTGATGACGTGGCGGGTTCTGGTGGGACGGTGGGACCCGCTGTGATATTGGGGAATTATCAGCAGCAGAATTTTTATGTGGAGTATGACTTGGAGAACGAGAGGTTTGGGTTTCGGAGTCAGAGTTGCCAAACGAACGTTTAA 1437 0.5226 MLLSCFSFPPSKMPSSHILFSLLSFLSIIITTFSSSTPNTITLHLSPLFTNHPSSSSHPFHTLKLAVSTSITRAHHLKNHKPNKSLETPVHPKTYGGYSIDLEFGTPSQTFPFVLDTGSTLVWLPCSSHYLCSKCNSFSNTPKFIPKNSSSSKFVGCTNPKCAWVFGPDVKSHCCRQDKAAFNNCSQTCPAYTVQYGLGSTAGFLLSENLNFPTKKYSDFLLGCSVVSVYQPAGIAGFGRGEESLPSQMNLTRFSYCLLSHQFDDSATITSNLVLETASSRDGKTNGVSYTPFLKNPTTKKNPAFGAYYYITLKRIVVGEKRVRVPRRLLEPNVDGDGGFIVDSGSTFTFMERPIFDLVAQEFAKQVSYTRAREAEKQFGLSPCFVLAGGAETASFPELRFEFRGGAKMRLPVANYFSLVGKGDVACLTIVSDDVAGSGGTVGPAVILGNYQQQNFYVEYDLENERFGFRSQSCQTNV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1682 478 SUPERFAMILY Acid proteases 93 474 IPR021109 -
Gso2g1682 478 Gene3D Acid Proteases 74 270 IPR021109 -
Gso2g1682 478 PANTHER OS07G0603500 PROTEIN-RELATED 15 474 - -
Gso2g1682 478 Pfam Xylanase inhibitor C-terminal 309 470 IPR032799 -
Gso2g1682 478 Pfam Xylanase inhibitor N-terminal 98 261 IPR032861 -
Gso2g1682 478 ProSiteProfiles Peptidase family A1 domain profile. 98 470 IPR033121 -
Gso2g1682 478 CDD pepsin_A_like_plant 97 474 IPR034161 -
Gso2g1682 478 PRINTS Pepsin (A1) aspartic protease family signature 104 124 IPR001461 GO:0004190|GO:0006508
Gso2g1682 478 PRINTS Pepsin (A1) aspartic protease family signature 340 351 IPR001461 GO:0004190|GO:0006508
Gso2g1682 478 PRINTS Pepsin (A1) aspartic protease family signature 446 461 IPR001461 GO:0004190|GO:0006508
Gso2g1682 478 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 113 124 IPR001969 GO:0004190|GO:0006508
Gso2g1682 478 Gene3D Acid Proteases 276 478 IPR021109 -
Gso2g1682 478 PANTHER BNACNNG47670D PROTEIN 15 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1682 Gso-Chr2 40008456 40010253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1682 96 474 Miscellaneous Gene Families AT1G44130 23.544 7.77e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1682 - - gmx:100808552 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1682 2 40008456 40010253 Gso10g0680 10 8867943 8885215 GST
Gso19g1663 19 45550975 45553088 Gso2g1682 2 40008456 40010253 PCT
Gso3g1691 3 42782200 42784025 Gso2g1682 2 40008456 40010253 PCT
Gso2g1682 2 40008456 40010253 Gso19g1663 19 45550975 45553088 PCT
Gso2g1682 2 40008456 40010253 Gso3g1691 3 42782200 42784025 PCT