Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1663 ATGGCTCCTCCTTCTTCTTATTACATTATTCTCTTTCTATTACTATCTCTTCTCTCTCACACAGCATTCACTTTCTCCAACTCCATCACTCTCCCTCTCTCCCCTCTCCTCACCAAACCTCATTCCTCAGACTCAGATCCATTCCACTCTGTCAAACTCGCCGCTTCCTCTTCCCTAACCCGGGCCCACCACCTCAAACACCGCAACAACAACTCCCCCTCCGTCGCCACAACCCCAGCATACCCCAAATCCTACGGTGGATACTCCATAGATCTCAACCTCGGAACCCCACCCCAAACCTCCCCTTTCGTTCTGGACACAGGTAGCAGCCTCGTATGGTTCCCCTGCACCTCCCACTACCTCTGCTCCCATTGCAACTTCCCCAATATCGACCCCACCAAAATCCCCACCTTCATTCCGAAAAACTCCTCCACCGCCAAACTCCTCGGTTGCAGAAACCCCAAATGCGGCTACCTCTTTGGCCCCGACGTTGAATCTCGCTGCCCCCAATGCAAAAAACCAGGATCCCAAAACTGTTCCCTCACGTGCCCCTCCTACATCATCCAATACGGCCTAGGCGCCACCGCAGGCTTCTTACTCCTCGACAACCTTAATTTCCCTGGAAAAACCGTTCCTCAATTCCTCGTAGGTTGCTCCATCCTCTCCATTCGACAACCCTCAGGAATCGCCGGCTTCGGTCGCGGCCAAGAGTCTCTCCCCTCACAAATGAATCTCAAAAGATTCTCTTACTGCTTAGTTTCCCACCGCTTCGACGATACCCCGCAAAGCAGCGACCTCGTTTTGCAGATTAGTTCCACTGGCGACACCAAAACTAACGGCCTCAGCTACACGCCGTTTCGCTCGAACCCGTCCAACAACTCCGTGTTCCGTGAGTACTACTACGTGACTCTTCGCAAGCTCATTGTCGGGGGCGTGGATGTGAAGATTCCGTACAAGTTTTTGGAGCCTGGCTCTGACGGTAACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACGTTCATGGAAAGGCCCGTTTATAATTTGGTGGCCCAAGAGTTTCTGAGGCAGCTGGGGAAGAAATATTCCAGGGAAGAGAACGTTGAGGCCCAATCTGGGTTGAGTCCCTGCTTTAATATCTCCGGCGTCAAGACCATCAGTTTCCCCGAGTTTACTTTTCAGTTCAAAGGAGGCGCCAAAATGTCGCAGCCGCTTCTGAATTATTTCTCGTTTGTCGGCGATGCCGAGGTCTTATGTTTCACCGTTGTCTCCGACGGTGGTGCCGGTCAGCCGAAGACCGCCGGTCCGGCCATCATCTTGGGGAACTATCAGCAGCAGAATTTCTACGTTGAATATGATTTGGAGAATGAGAGGTTCGGATTTGGTCCTCGTAATTGCAAAAGGAAAGCTTAG 1413 0.523 MAPPSSYYIILFLLLSLLSHTAFTFSNSITLPLSPLLTKPHSSDSDPFHSVKLAASSSLTRAHHLKHRNNNSPSVATTPAYPKSYGGYSIDLNLGTPPQTSPFVLDTGSSLVWFPCTSHYLCSHCNFPNIDPTKIPTFIPKNSSTAKLLGCRNPKCGYLFGPDVESRCPQCKKPGSQNCSLTCPSYIIQYGLGATAGFLLLDNLNFPGKTVPQFLVGCSILSIRQPSGIAGFGRGQESLPSQMNLKRFSYCLVSHRFDDTPQSSDLVLQISSTGDTKTNGLSYTPFRSNPSNNSVFREYYYVTLRKLIVGGVDVKIPYKFLEPGSDGNGGTIVDSGSTFTFMERPVYNLVAQEFLRQLGKKYSREENVEAQSGLSPCFNISGVKTISFPEFTFQFKGGAKMSQPLLNYFSFVGDAEVLCFTVVSDGGAGQPKTAGPAIILGNYQQQNFYVEYDLENERFGFGPRNCKRKA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1663 470 PRINTS Pepsin (A1) aspartic protease family signature 94 114 IPR001461 GO:0004190|GO:0006508
Gso19g1663 470 PRINTS Pepsin (A1) aspartic protease family signature 331 342 IPR001461 GO:0004190|GO:0006508
Gso19g1663 470 PRINTS Pepsin (A1) aspartic protease family signature 438 453 IPR001461 GO:0004190|GO:0006508
Gso19g1663 470 CDD pepsin_A_like_plant 87 466 IPR034161 -
Gso19g1663 470 Pfam Xylanase inhibitor C-terminal 300 462 IPR032799 -
Gso19g1663 470 SUPERFAMILY Acid proteases 83 466 IPR021109 -
Gso19g1663 470 Gene3D Acid Proteases 268 470 IPR021109 -
Gso19g1663 470 ProSiteProfiles Peptidase family A1 domain profile. 88 462 IPR033121 -
Gso19g1663 470 PANTHER BNACNNG47670D PROTEIN 6 466 - -
Gso19g1663 470 Pfam Xylanase inhibitor N-terminal 88 265 IPR032861 -
Gso19g1663 470 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 103 114 IPR001969 GO:0004190|GO:0006508
Gso19g1663 470 Gene3D Acid Proteases 40 267 IPR021109 -
Gso19g1663 470 PANTHER OS07G0603500 PROTEIN-RELATED 6 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1663 Gso-Chr19 45550975 45553088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1663 59 468 Miscellaneous Gene Families AT1G44130 24.661 1.04e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1663 - - gmx:100788618 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1663 19 45550975 45553088 Gso3g1691 3 42782200 42784025 GST
Gso19g1663 19 45550975 45553088 Gso2g1682 2 40008456 40010253 PCT
Gso19g1663 19 45550975 45553088 Gso10g0680 10 8867943 8885215 PCT
Gso2g1682 2 40008456 40010253 Gso19g1663 19 45550975 45553088 PCT
Gso10g0680 10 8867943 8885215 Gso19g1663 19 45550975 45553088 PCT