Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0680 ATGGAAGTGACGAAATATGAAGAACCTATCCCGCCAGCCCTGGTTGCAAAACCAGGCTGCTCTGAACGCCCTCTGCACCTAGTCCGTGCCTCTAAAGAACCTATCTCCCCAGCCCTAACCCTGTGCACCTATGACACGCTAAACTGGACTCGTCAGTCAAACCAGCGAGATGAGTCCACGTTGAACTCGCCAATGGAGGTGGCAATAACCACTGGCTATGTCGCCAATGGTAGCAGCGAGAAGTCACGTGCTCGTCCCTCATCATATCACCAGCCTTCCATTTCCGTTATAAATAAACAACCAAAAACCAAAAAAACTTCGTCAAAACCATCCCATCACCTTCACACTCGAAGGCGTTTTTGCGTTTTTTCTTTCCCTCAAAATGCTTCTTCCTCACATTATTCTCTCCCTCTTCTCTTTCCTCTCCATCATATTACTATTCACCACCATTACTTCATCCACCCCCACCCCCAACACCATCATCACCCTCCCTTATTCACCCACCACCCCTCTTCAAGTAATTCACACCCATTCCACACCCTCCAACTCGCCGTCTCCACATCCATCACAAGAGCCCACCACCTCAAAAACCACAACAACCCTAGTTCACTCAAAACCCTAGTTCACCCCAAAACCTACGGAGGCTACTCAATAGACCTCAAATTCGGAACCCCACCACAAACGTTCCCCTTCGTTCTCGACACTGGAAGCAGCCTCGTCTGGCTCCCATGCTACTCCCACTACCTCTGCTCCAAATGCAACTCTTTCTCAAACAACAACACACCAAAATTCATCCCAAAAGACTCATTTTCTTCAAAGTTTGTTGGCTGCAGAAACCCTAAATGCGCTTGGGTCTTTGGCTCCGACGTTACGTCTCATTGTTGCAAGCTAGCCAAAGCCGCTTTTAGTAATAACAATAACTGTTCCCAAACATGCCCTGCATACACCGTCCAATACGGTCTCGGCTCCACCGCGGGTTTTCTCTTATCAGAAAATCTCAATTTTCCCGCAAAAAATGTTTCTGATTTTCTCGTCGGCTGCTCCGTCGTCTCTGTCTACCAGCCTGGCGGAATCGCCGGGTTCGGCCGGGGAGAAGAGTCCTTACCGGCGCAGATGAACCTCACGAGATTCTCTTATTGCCTACTCTCTCACCAATTCGACGAATCGCCGGAAAACAGCGACCTCGTCATGGAAGCTACCAACTCCGGCGAGGGAAAAAAAACCAACGGCGTCAGCTACACGGCGTTTCTGAAAAATCCGTCAACAAAAAAGCCCGCGTTCGGCGCGTACTATTATATCACTCTTAGAAAAATTGTTGTTGGTGAAAAGCGCGTGAGGGTTCCGAGGAGGATGTTGGAGCCCGACGTTAACGGCGACGGCGGGTTCATCGTTGACTCGGGGTCAACGTTAACATTCATGGAGAGGCCGATTTTCGATCTGGTAGCGGAGGAGTTTGTAAAGCAGGTGAACTACACGCGCGCGAGGGAGCTTGAAAAACAGTTTGGGCTGAGTCCGTGTTTTGTTTTGGCGGGTGGCGCTGAAACGGCGTCGTTTCCCGAGATGAGGTTTGAGTTCAGGGGTGGCGCGAAGATGAGGCTGCCGGTGGCGAATTATTTCTCGCTGGTGGGGAAAGGTGACGTGGCGTGCTTGACGATTGTTTCTGATGACGTGGCGGGTCAGGGTGGGGCGGTGGGGCCCGCAGTGATATTGGGGAACTATCAGCAACAGAATTTCTACGTGGAGTGTGACTTGGAGAATGAAAGGTTTGGGTTTCGGAGTCAGAGTTGCCAAAAGAGGGTTTATTAA 1806 0.5044 MEVTKYEEPIPPALVAKPGCSERPLHLVRASKEPISPALTLCTYDTLNWTRQSNQRDESTLNSPMEVAITTGYVANGSSEKSRARPSSYHQPSISVINKQPKTKKTSSKPSHHLHTRRRFCVFSFPQNASSSHYSLPLLFPLHHITIHHHYFIHPHPQHHHHPPLFTHHPSSSNSHPFHTLQLAVSTSITRAHHLKNHNNPSSLKTLVHPKTYGGYSIDLKFGTPPQTFPFVLDTGSSLVWLPCYSHYLCSKCNSFSNNNTPKFIPKDSFSSKFVGCRNPKCAWVFGSDVTSHCCKLAKAAFSNNNNCSQTCPAYTVQYGLGSTAGFLLSENLNFPAKNVSDFLVGCSVVSVYQPGGIAGFGRGEESLPAQMNLTRFSYCLLSHQFDESPENSDLVMEATNSGEGKKTNGVSYTAFLKNPSTKKPAFGAYYYITLRKIVVGEKRVRVPRRMLEPDVNGDGGFIVDSGSTLTFMERPIFDLVAEEFVKQVNYTRARELEKQFGLSPCFVLAGGAETASFPEMRFEFRGGAKMRLPVANYFSLVGKGDVACLTIVSDDVAGQGGAVGPAVILGNYQQQNFYVECDLENERFGFRSQSCQKRVY* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0680 601 Pfam Xylanase inhibitor N-terminal 216 385 IPR032861 -
Gso10g0680 601 Gene3D Acid Proteases 191 390 IPR021109 -
Gso10g0680 601 CDD pepsin_A_like_plant 215 596 IPR034161 -
Gso10g0680 601 MobiDBLite consensus disorder prediction 74 104 - -
Gso10g0680 601 PRINTS Pepsin (A1) aspartic protease family signature 222 242 IPR001461 GO:0004190|GO:0006508
Gso10g0680 601 PRINTS Pepsin (A1) aspartic protease family signature 462 473 IPR001461 GO:0004190|GO:0006508
Gso10g0680 601 PANTHER BNACNNG47670D PROTEIN 164 596 - -
Gso10g0680 601 MobiDBLite consensus disorder prediction 74 113 - -
Gso10g0680 601 ProSiteProfiles Peptidase family A1 domain profile. 216 592 IPR033121 -
Gso10g0680 601 SUPERFAMILY Acid proteases 213 596 IPR021109 -
Gso10g0680 601 Pfam Xylanase inhibitor C-terminal 431 592 IPR032799 -
Gso10g0680 601 Gene3D Acid Proteases 400 600 IPR021109 -
Gso10g0680 601 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 231 242 IPR001969 GO:0004190|GO:0006508
Gso10g0680 601 PANTHER OS07G0603500 PROTEIN-RELATED 164 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0680 Gso-Chr10 8867943 8885215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0680 214 598 Miscellaneous Gene Families AT1G44130 22.892 8.20e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0680 - - gmx:100810876 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1682 2 40008456 40010253 Gso10g0680 10 8867943 8885215 GST
Gso19g1663 19 45550975 45553088 Gso10g0680 10 8867943 8885215 PCT
Gso3g1691 3 42782200 42784025 Gso10g0680 10 8867943 8885215 PCT
Gso10g0680 10 8867943 8885215 Gso19g1663 19 45550975 45553088 PCT
Gso10g0680 10 8867943 8885215 Gso3g1691 3 42782200 42784025 PCT