Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1358 ATGGCTGCAAAGCGCGTGTACCAAGTTTGGAAAGGAAGTAATAAATTCATATGTGGAGGGAGGTTGGTATTCGGGCCCGATGCTAGGTCCCTGTTTGTCACCTTGTTGCTGATTATTGTTCCAGTTATAATCTTTTGCATATGTGTAGCAAGGCATCTTCGGCATGAACTTTCTTCATATAATTCTGGATATGCTATTTTAGCTGTGGCTATTCTCTTTACTGTTCATGTCCTGGTGGTTCTCTTTCTTACTTCATCAGGTGATCCGGGCATTGTTCCAAGGAATCCACATCCCCCAGAAGAAGAGTTTCGTTATGATTCTTCAGTTTCTGTTGATGCTGGGGGAGCTGGACGACAAACGCCAAGTCTTCAGTTCCCTCGAACAAAAGAAGTTGTAGTCAATGGCATTGCTGTAAAGGTGAAATATTGTGAGACTTGTATGTTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATTTGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATTGGTCTGAGGAACTACCGTTACTTCTTTATGTTTATTTCTTCAGCAACTATTCTGTGCATCTATGTGTTTTCCCTCTCAGCTTTTTACATCAAGGTTCTGATGGATAATTATGATGGCACAGTTTGGAAGGCAATGAAAGAATCCCCTGCATCTGTGATACTAATGGCTTATTGTTTCATCTCTTTGTGGTTTGTTGGTGGACTGACTGGTTTTCATTTATACCTTATAGGCTTAAATCAGACTACCTATGAAAATTTCCGGTACAGAGCTGAAGGCAGGATCAATGTTTTTAACCGGGGTTGTTTAAATAATTTTCTGGAAGTGTTTTGCACAAAAGTAAAGCCCTCAAGGAACAATTTCAGGGCATTTGCTCGAGAGGAGGTACCACCGAGACCTCTGGCTCCGATCATTCCCCGGGATCGTGAGGACTTGGGTGGAGACCACCGCCCTAAGGTTGAAGCCGATCTTGATATTGGTGAAGACCTATTGAAGATATCACAGCGCAGGAACATCGAAGAACTTGATGAGGACATTCGGAGCAGAGGGAGCAATGGACCACCCCACAATGCATCTGAACCTGACTCAATTTTGTCCTCAGATCATCGAGCTCCCACAATTCGATCTGATGCTAGGCACTCGAGTTGGGAAAGGAGTGGAAACTGGGAATTTGCACAAGATGCCCTTGCCAATTCAAATGCAACAGAAAGCAGAAACTATGTGACTTCAAAGGAAATGCGCCAATGA 1278 0.4397 MAAKRVYQVWKGSNKFICGGRLVFGPDARSLFVTLLLIIVPVIIFCICVARHLRHELSSYNSGYAILAVAILFTVHVLVVLFLTSSGDPGIVPRNPHPPEEEFRYDSSVSVDAGGAGRQTPSLQFPRTKEVVVNGIAVKVKYCETCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFISSATILCIYVFSLSAFYIKVLMDNYDGTVWKAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGLNQTTYENFRYRAEGRINVFNRGCLNNFLEVFCTKVKPSRNNFRAFAREEVPPRPLAPIIPRDREDLGGDHRPKVEADLDIGEDLLKISQRRNIEELDEDIRSRGSNGPPHNASEPDSILSSDHRAPTIRSDARHSSWERSGNWEFAQDALANSNATESRNYVTSKEMRQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1358 425 Pfam DHHC palmitoyltransferase 141 265 IPR001594 GO:0016409
Gso20g1358 425 ProSiteProfiles DHHC domain profile. 141 191 - -
Gso20g1358 425 MobiDBLite consensus disorder prediction 396 418 - -
Gso20g1358 425 MobiDBLite consensus disorder prediction 362 380 - -
Gso20g1358 425 MobiDBLite consensus disorder prediction 354 425 - -
Gso20g1358 425 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 6 424 - -
Gso20g1358 425 PANTHER S-ACYLTRANSFERASE 6 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1358 Gso-Chr20 43715280 43720633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1358 65 287 Lipid Metabolism Gene Families AT4G22750 27.350 3.36e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1358 K16675 - gmx:100820208 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1358 20 43715280 43720633 Gso10g1995 10 46938463 46943480 GST
Gso16g1317 16 32560643 32571275 Gso20g1358 20 43715280 43720633 PCT
Gso2g0657 2 6788876 6795341 Gso20g1358 20 43715280 43720633 PCT
Gso20g1358 20 43715280 43720633 Gso16g1317 16 32560643 32571275 PCT
Gso20g1358 20 43715280 43720633 Gso2g0657 2 6788876 6795341 PCT