Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1232 ATGGTCTGGTACCACACCAGAGCATATAACCATTCTTTCAAACAGAACAATACAAATCTCCATGCTTTTATAAATCAAACTCCAACCGATTTCTCTCTTCATTCAGTTCATTGCGTTCCCTCTCTTCTCTTCCTCTCTTCTCTATATAAAGTACTATTAACTCCCACTAAAACCCATTCCTGTCTTTTTCTTCTTCTTCCGGCTCTGCATTTGCAATACTCTGTTTTCTTGGTTTCAATTCAATCACACACCTCCATTGCCCTCATGGCTCACTTTACCTCCTCAGGTAAATCAGACGATCTCACAAAAGATGACTGTAAGGGACAAAGTGCACTTGTTGTTTGCTTTGGTGAAATTTTAATAGATTTTGTGCCAACAGTGGGTGGAGTGTCACTAGCTGAAGCACCCGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCCAACGTGGCTGTTGGAATATCTAGGCTTGGGGGGTCATCTGCCTTTGTAGGCAAGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAGAACGATGTTGAGACATCTGGCATGAAGTTTGACCCTAATGCAAGAACTGCGTTAGCTTTTGTTACACTTAGAGCTGATGGTGAGCGTGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTACTTCAAGAGTCCGAGCTTGATAAAAATCTCATAAAGAAGGCTAAAATTTTCCATTATGGTTCCATCAGCTTGATTGATGAGCCATGCAAGTCTGCTCATCTTGCTGCTATGAGATTTGCTAAAGAATCTGGTTGCATTCTTTCGTATGATCCAAATTTGAGATTGGCACTATGGCCATCTGCTGAGGCTGCTCGGGATGGCATAATGAGTATATGGGATCAAGCCGATGTCATAAAGATAAGTGAGGATGAGATTACATTTTTGACTGGTGGTGATGATCCTTATGATGATAATGTTGTATTAAAGAAGCTTTTTCATCCCAATCTCAAGCTTTTAATAGTTACTGAAGGCTCAGAAGGTTGTAGATATTACACCAAGGAATTTAAGGGCAGGGTTGCTGGTGTTAAAGTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTATCTATAGCTTAGCTTCTGACCAAAGTCTTTTCCAGAATGAGGAGCATCTCCGAAAAGCTCTACATTTTGCCAATGTATGTGGTGCCATCACGGTAACAGAGAGAGGGGCAATTCCTGCATTACCTACAAAAGAAGCTGTTCTCCAATTCGCTGCAACATAA 1290 0.414 MVWYHTRAYNHSFKQNNTNLHAFINQTPTDFSLHSVHCVPSLLFLSSLYKVLLTPTKTHSCLFLLLPALHLQYSVFLVSIQSHTSIALMAHFTSSGKSDDLTKDDCKGQSALVVCFGEILIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKVGADEFGYMLADILKQNDVETSGMKFDPNARTALAFVTLRADGEREFLFFRNPSADMLLQESELDKNLIKKAKIFHYGSISLIDEPCKSAHLAAMRFAKESGCILSYDPNLRLALWPSAEAARDGIMSIWDQADVIKISEDEITFLTGGDDPYDDNVVLKKLFHPNLKLLIVTEGSEGCRYYTKEFKGRVAGVKVKPVDTTGAGDAFVSGIIYSLASDQSLFQNEEHLRKALHFANVCGAITVTERGAIPALPTKEAVLQFAAT* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1232 429 PRINTS Ribokinase signature 138 157 IPR002139 GO:0016301
Gso20g1232 429 PRINTS Ribokinase signature 293 308 IPR002139 GO:0016301
Gso20g1232 429 PRINTS Ribokinase signature 335 346 IPR002139 GO:0016301
Gso20g1232 429 Gene3D - 109 429 IPR029056 -
Gso20g1232 429 SUPERFAMILY Ribokinase-like 113 426 IPR029056 -
Gso20g1232 429 PANTHER FRUCTOKINASE-7-RELATED 103 427 - -
Gso20g1232 429 CDD bac_FRK 112 414 - -
Gso20g1232 429 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 364 377 IPR002173 GO:0016773
Gso20g1232 429 PANTHER HEXOKINASE FAMILY MEMBER 103 427 - -
Gso20g1232 429 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 143 167 IPR002173 GO:0016773
Gso20g1232 429 Pfam pfkB family carbohydrate kinase 111 419 IPR011611 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1232 Gso-Chr20 42335959 42339660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1232 K00847 - gmx:100818404 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1232 20 42335959 42339660 Gso10g2148 10 48506006 48509548 GST
Gso16g1605 16 36642846 36647157 Gso20g1232 20 42335959 42339660 PCT
Gso9g1226 9 35254456 35258872 Gso20g1232 20 42335959 42339660 PCT
Gso20g1232 20 42335959 42339660 Gso16g1605 16 36642846 36647157 PCT
Gso20g1232 20 42335959 42339660 Gso9g1226 9 35254456 35258872 PCT