Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2155 ATGGAGGGCAAGAAAAAGACAACAAATTGCCTTCTCTTCCTGTTCCTCTCCCTCACCCTCTCTCTCTCTCTCTCCGCCGCATTACAACTCCAAACCCAAACCTTGCCCCTCCACTCCCTCCCCCACCCACCCGCAATCTCATGGCCCGAATCCGAATCCGAACCCGACCCAGAAGAAGAAGCTCTCTCACTTCACCTCCACCACATAGACGCTCTCTCCTCCAACAAAACCCCGGAGCAGCTCTTCCAGCTCAGGCTCCAACGCGACGCCAAGAGAGTTGAAGGTGTAGTCGCACTCGCAGCTCTGAACCAAAGCCACGCTCGCAGATCCGGCTCCAGTTTCAGTAGCTCCATCATTTCGGGCTTAGCACAAGGTAGCGGTGAGTACTTCACGCGCATAGGCGTAGGCACACCCGCAAGGTACGTCTACATGGTTTTAGACACCGGAAGCGACGTCGTTTGGCTCCAATGCGCCCCTTGCCGCAAATGCTACACCCAAGCCGACCCCGTTTTTGACCCCACCAAATCCCGAACCTACGCCGGAATCCCCTGCGGGGCCCCTCTCTGCCGCCGCTTGGACTCCCCCGGCTGCAACAACAAGAACAAGGTTTGCCAGTACCAGGTTTCCTACGGCGACGGCTCCTTCACATTCGGCGATTTCTCCACCGAAACGCTCACGTTTCGAAGAACCAGAGTCACGCGCGTCGCGCTCGGCTGCGGCCACGACAATGAAGGACTCTTTATCGGCGCTGCTGGGCTTTTGGGCCTGGGCCGTGGGAGGTTATCGTTTCCGGTCCAGACCGGTCGCCGGTTCAACCAGAAATTCTCTTACTGCCTCGTCGACCGTTCCGCTTCGGCCAAACCCTCCTCTGTCGTTTTCGGAGATTCCGCTGTTTCCCGAACCGCGCGCTTCACTCCTCTTATAAAAAACCCCAAGCTCGACACCTTCTACTACCTCGAGCTCCTCGGGATCAGCGTCGGCGGCTCGCCGGTGCGCGGCCTCTCCGCCTCGCTCTTCCGCCTCGACGCAGCGGGAAACGGCGGCGTCATCATCGACTCGGGCACCTCCGTGACCCGGCTCACCCGACCCGCCTACATTGCCCTCCGAGACGCCTTCCGCGTCGGGGCCTCGCATCTGAAGCGTGCAGCGGAGTTCTCGCTCTTCGACACGTGTTTCGACCTGTCCGGGCTCACGGAGGTGAAGGTGCCCACGGTGGTGCTGCATTTCCGAGGTGCCGACGTGTCATTGCCGGCGACGAATTACTTGATTCCGGTGGATAACAGTGGGAGCTTCTGCTTCGCGTTTGCGGGAACTATGAGCGGTTTGTCCATAATTGGTAACATCCAACAACAAGGGTTCCGGGTCTCCTTCGACCTTGCGGGTTCTCGGGTCGGGTTTGCCCCTAGAGGTTGCGTTTGA 1419 0.5927 MEGKKKTTNCLLFLFLSLTLSLSLSAALQLQTQTLPLHSLPHPPAISWPESESEPDPEEEALSLHLHHIDALSSNKTPEQLFQLRLQRDAKRVEGVVALAALNQSHARRSGSSFSSSIISGLAQGSGEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYTQADPVFDPTKSRTYAGIPCGAPLCRRLDSPGCNNKNKVCQYQVSYGDGSFTFGDFSTETLTFRRTRVTRVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGDSAVSRTARFTPLIKNPKLDTFYYLELLGISVGGSPVRGLSASLFRLDAAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASHLKRAAEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVSFDLAGSRVGFAPRGCV* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2155 472 SUPERFAMILY Acid proteases 122 471 IPR021109 -
Gso19g2155 472 Pfam Xylanase inhibitor C-terminal 317 467 IPR032799 -
Gso19g2155 472 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 144 155 IPR001969 GO:0004190|GO:0006508
Gso19g2155 472 Pfam Xylanase inhibitor N-terminal 129 295 IPR032861 -
Gso19g2155 472 Gene3D Acid Proteases 93 292 IPR021109 -
Gso19g2155 472 Gene3D Acid Proteases 293 472 IPR021109 -
Gso19g2155 472 ProSiteProfiles Peptidase family A1 domain profile. 129 467 IPR033121 -
Gso19g2155 472 PANTHER ASPARTYL PROTEASES 24 471 IPR001461 GO:0004190|GO:0006508
Gso19g2155 472 CDD cnd41_like 128 471 IPR033873 -
Gso19g2155 472 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 24 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2155 Gso-Chr19 50031476 50033317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2155 119 471 Miscellaneous Gene Families AT1G77480 27.461 5.31e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2155 K22683 - gmx:100794269 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2155 19 50031476 50033317 Gso9g0329 9 3182011 3188645 GST
Gso19g2155 19 50031476 50033317 Gso7g0491 7 4934166 4935908 PCT
Gso19g2155 19 50031476 50033317 Gso16g0197 16 2305230 2307091 PCT
Gso7g0491 7 4934166 4935908 Gso19g2155 19 50031476 50033317 PCT
Gso16g0197 16 2305230 2307091 Gso19g2155 19 50031476 50033317 PCT