Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0197 ATGGAAGAGAAACTAAAGTACCCCTTTCTCTCTTCCTTCTTAACCCTCTTCTTCTGCATCTCCGCCACTTCCATTGCCCCACATAACTCCCAAACCCAAACCCTCCTCCTCCGCACCCTCCCTAACCCACCCACACTCTCCTGGCCCGAATCAACCATATCAGGATCCGACCCGGAACCCGACCCCTTCTCCCTTTCGGTTCACCTCAACCACATAGACGCACTCTCCCCCAACAAAACCCCTTCCCAACTCTTCCACCTAAGACTCCTACGCGACGGCGCAAGAGTCAAAACACTAAACTCCTTAGCCGCAGCCACAAATCAAACCCGACCCACTAATACCGGGTCGGGTTTCAGCAGCTCCGTAGTTTCGGGTCTCTCACAGGGAAGCGGCGAGTACTTCACGCGCCTCGGCGTGGGAACCCCTCCGAAGTACCTCTACATTGTCCTCGACACGGGAAGCGACGTCGTTTGGCTCCAATGCAAGCCCTGCACCAAATGCTACTCCCAAACCGACCAAATCTTTGACCCATCAAAATCGAAAACCTTCGCCGGAATCCCCTGCTCCTCCCCTCTCTGCCGCCGCCTCGACTCACCGGGATGCAATACAAAAAACAACCTTTGCCAGTACCAGGTTTCCTACGGAGACGGTTCTTTCACTGTCGGAGATTTCTCAATAGAAACTCTCACGTTCCGACGCGCCGAAGTCCCGCGCGTGGCCCTCGGATGCGGTCACGACAACGAGGGACTTTTCGTGGGCGCCGCAGGTTTGTTGGGCCTAGGTCGCGGCGGGTTGTCGTTTCCTACCCAGACCGGAACCCGGTTCAATAACAAATTCTCTTACTGTTTAACAGACCGAACCGCTTCCGCTAAACCGTCTTCCGTTGTGTTCGGCGACTCGGCTGTCTCTCGAACCGCCCGGTTCACTCCTTTGGTTAAAAACCCTAAGCTTGATACGTTTTATTATGTTGAGCTTCTCGGGTTTAGTGTTGGCGGCGCGCCGGTTCGGGGGATTTCGGCTTCACTTTTTCGGCTCGACTCCACCGGGAACGGGGGTGTTATAATTGACTCAGGGACTTCCGTCACGCGCCTCACGCGCCCTGGTTATGTGGCGTTAAGAGACGCGTTTCGGGTCGGGGCTTCACATTTGAAGCGCGCGTCTGAGTTTTCGCTTTTTGACACGTGCTATGATCTTTCGGGGCTGTCGGAGGTTAAGGTTCCGACCGTGGTACTGCATTTTCGGGGTGCTGACGTGTCACTGCCGGCGTCGAATTATCTCATTCCGGTGGATAATGACGGGACTTTTTGTTTTGCGTTCGCCGGAACGATGAGTGGGTTGTCTATTGTTGGGAACATTCAGCAGCAAGGGTTTCGGGTTGTGTTCGATTTGGCGGGTTCTCGGGTCGGGTTTGCCCCGAGAGGGTGCGCGTGA 1431 0.5521 MEEKLKYPFLSSFLTLFFCISATSIAPHNSQTQTLLLRTLPNPPTLSWPESTISGSDPEPDPFSLSVHLNHIDALSPNKTPSQLFHLRLLRDGARVKTLNSLAAATNQTRPTNTGSGFSSSVVSGLSQGSGEYFTRLGVGTPPKYLYIVLDTGSDVVWLQCKPCTKCYSQTDQIFDPSKSKTFAGIPCSSPLCRRLDSPGCNTKNNLCQYQVSYGDGSFTVGDFSIETLTFRRAEVPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPTQTGTRFNNKFSYCLTDRTASAKPSSVVFGDSAVSRTARFTPLVKNPKLDTFYYVELLGFSVGGAPVRGISASLFRLDSTGNGGVIIDSGTSVTRLTRPGYVALRDAFRVGASHLKRASEFSLFDTCYDLSGLSEVKVPTVVLHFRGADVSLPASNYLIPVDNDGTFCFAFAGTMSGLSIVGNIQQQGFRVVFDLAGSRVGFAPRGCA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0197 476 SUPERFAMILY Acid proteases 126 475 IPR021109 -
Gso16g0197 476 Pfam Xylanase inhibitor N-terminal 133 299 IPR032861 -
Gso16g0197 476 PRINTS Pepsin (A1) aspartic protease family signature 139 159 IPR001461 GO:0004190|GO:0006508
Gso16g0197 476 PRINTS Pepsin (A1) aspartic protease family signature 353 364 IPR001461 GO:0004190|GO:0006508
Gso16g0197 476 PRINTS Pepsin (A1) aspartic protease family signature 447 462 IPR001461 GO:0004190|GO:0006508
Gso16g0197 476 PANTHER ASPARTYL PROTEASES 25 475 IPR001461 GO:0004190|GO:0006508
Gso16g0197 476 Gene3D Acid Proteases 110 296 IPR021109 -
Gso16g0197 476 Pfam Xylanase inhibitor C-terminal 321 471 IPR032799 -
Gso16g0197 476 ProSiteProfiles Peptidase family A1 domain profile. 133 471 IPR033121 -
Gso16g0197 476 CDD cnd41_like 132 475 IPR033873 -
Gso16g0197 476 Gene3D Acid Proteases 297 476 IPR021109 -
Gso16g0197 476 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 25 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0197 Gso-Chr16 2305230 2307091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0197 94 475 Miscellaneous Gene Families AT1G77480 27.751 4.89e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0197 K22683 - gmx:100808163 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0491 7 4934166 4935908 Gso16g0197 16 2305230 2307091 GST
Gso19g2155 19 50031476 50033317 Gso16g0197 16 2305230 2307091 PCT
Gso9g0329 9 3182011 3188645 Gso16g0197 16 2305230 2307091 PCT
Gso16g0197 16 2305230 2307091 Gso19g2155 19 50031476 50033317 PCT
Gso16g0197 16 2305230 2307091 Gso9g0329 9 3182011 3188645 PCT