Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1811 ATGGCGGTTACTACTCACACTCTATCTGCCACAGAAAAGAAACACTGGTGGCTTACCAACCGAAAGATTGTTGAGAAATACATTAAGGATGCAAGGAGCTTAATAGCGACGCAAGATCAGAGCGAGATAGCTTCGGCTCTGAACCTTCTAGATGCGGCTCTGGCGATTTCTCCGAGGTTTGACCAAGCGCTTGAGTTGAGAGCAAGGGCGTTGCTCTATTTGCGGCGGTTCAAGGAGGTTGCTGATATGCTTCAGGACTACATTCCGAGCCTGAGAATGGGAAACGATGACTCATCATCGTCTTCTTCTGACAGCTCTCAGCAACTTTCGAGGGAGGGAGTGAAGCTTCTCTCTTCTTCCTCGGAGTCTCCGGTGAGGGATCATAGTTTCAAGTGCTTCTCTGTGTCTGACCTCAAGAAGAAGGTCATGGCAGGACTATGTAAAACTTGCGACAAGGAAGGGCAATGGAGATACTTGGTGTTGGGTGAAGCATGCTGCCACCTAGGCCTAATGGAGGATGCAATGGTTCTTCTTCAAACGGGGAAACGCATTGCAAGCGCCGCATTCCGGCGCGAGAGTGTGTGCTGGTCGGAAGACAGCTTTTGTGTTACCAATATACCCTTCTCCGGCGATTCCACAAACGCGCCACCCTCAACTCCGCCGCGAACCCTTCTCGCAGACTCCGAGAGCGTGGCCCAACTCCTCGGCCACATAAAGTTCCTCCTCCGCCGCCGCGCCGCTGCACTCGCCGCCCTCGACGCTGGACTCTACTCGGAGGCCGTCCGCCACTTCTCCAAAATCGTCGACGGCCGCCGCAGCGCGCCGCAGAGCTTCCTCGCTGAGTGCTACATGCACCGCGCCTCCGCGCACCGTTCCGCCGGCAGAATCGCAGAATCAATCGCCGATTGCAACCGTACGCTCGCATTAGACCCCACTTGCATCCAAGCACTCGAAACCAGAGCTTCACTCTTCGAAACAATTCGCTGTTTACCAGATTCTCTTCACGACCTCGAACACTTGAAGCTTCTCTACAACTCAATCTTGCGTGATCGCAAGCTTCCAGGTCCTGCGTGGAAGCGCCACAACGTGCGATACAGAGAAATTCCAGGGAAACTCTGCGCCCTCACTATTAAAATTCAGGAACTTAAACAGAGGTTGGCTTCTGGTGAAACCGGGAATGTGGATTACTATGCTTTGATTGGTGTCCGACGAGGATGTTCCCGGTCGGAGTTGGAGAGGGCACACTTGTTGCTTTCCTTGCGGCACAAGCCTGATAAGGCAACTGGGTTCATCGAAAGGTGCGAGCTTGCGGATGAGCGTGATGTTGAGTCTGTTAAAGAGAGGGTGAAGATGTCGTCGTTGTTGTTATATAGATTGGTTCAGAAGGGTTACACTAATGTCATGGGTAACATTATGGATGAGGAAGCTGCTGAGAAGCAGAGAAAGAAGGCTGCTTTGCAAGCTATTCAAGCACAGAAAGAGAAAGCCAATGAAGCTGCTGAGCTGAATAAGGTCGTTGAGAGTAATAGGAGCAGCGTGGAGAATACTAATACTAATAATACTCAAAATAGGTCTATGGTGTCTTCTTCTACTGTGAATCCGGCGGTGTTTCAGGGTGTTTTCTGCCGCGATCTTACGGTGGTGGGGAACTTGCTTTCTCAGGCGGGGTTTAACCGGTCCATGCCGGTGAAGTATGAAGCGTTGAGCTGTTGA 1713 0.5166 MAVTTHTLSATEKKHWWLTNRKIVEKYIKDARSLIATQDQSEIASALNLLDAALAISPRFDQALELRARALLYLRRFKEVADMLQDYIPSLRMGNDDSSSSSSDSSQQLSREGVKLLSSSSESPVRDHSFKCFSVSDLKKKVMAGLCKTCDKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRIASAAFRRESVCWSEDSFCVTNIPFSGDSTNAPPSTPPRTLLADSESVAQLLGHIKFLLRRRAAALAALDAGLYSEAVRHFSKIVDGRRSAPQSFLAECYMHRASAHRSAGRIAESIADCNRTLALDPTCIQALETRASLFETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCALTIKIQELKQRLASGETGNVDYYALIGVRRGCSRSELERAHLLLSLRHKPDKATGFIERCELADERDVESVKERVKMSSLLLYRLVQKGYTNVMGNIMDEEAAEKQRKKAALQAIQAQKEKANEAAELNKVVESNRSSVENTNTNNTQNRSMVSSSTVNPAVFQGVFCRDLTVVGNLLSQAGFNRSMPVKYEALSC* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1811 570 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 570 - -
Gso19g1811 570 MobiDBLite consensus disorder prediction 507 527 - -
Gso19g1811 570 Gene3D Tetratricopeptide repeat domain 221 353 IPR011990 GO:0005515
Gso19g1811 570 Gene3D DnaJ domain 381 530 IPR036869 -
Gso19g1811 570 PANTHER - 1 570 - -
Gso19g1811 570 SUPERFAMILY Chaperone J-domain 391 429 IPR036869 -
Gso19g1811 570 Coils Coil 472 509 - -
Gso19g1811 570 SMART tpr_5 280 313 IPR019734 GO:0005515
Gso19g1811 570 SUPERFAMILY TPR-like 246 341 IPR011990 GO:0005515
Gso19g1811 570 CDD DnaJ 395 429 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1811 Gso-Chr19 46841125 46844641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1811 - - gmx:100808420 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1811 19 46841125 46844641 Gso3g1847 3 44075835 44079335 GST
Gso19g1811 19 46841125 46844641 Gso2g0117 2 1212056 1215382 PCT
Gso19g1811 19 46841125 46844641 Gso10g0123 10 1302327 1305658 PCT
Gso2g0117 2 1212056 1215382 Gso19g1811 19 46841125 46844641 PCT
Gso10g0123 10 1302327 1305658 Gso19g1811 19 46841125 46844641 PCT