Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1323 ATGCTCTGTCTCCGGGGAAAGGAAAGTGAGATACTCTCTCTATCACCAAACCAAAAGCACAAAAAAAAAGTAAAAGGGTGTGGTGCTGTTGTGGAGATCCGAGATTTGTTTCGTCTCTTATGCCCCATGAGGAGTTTCTTCCCTGCTGAATCCTGTAAAGAGGCTCACCCAAATGCTTTGAATCCTCAGTCTTGGCTTCATATTGAAAGAGGGAAACTTCCCAAGTTGTCATCACACCCCTCATCTGCCTCAATTGAATCTCTGATCAAGGTCCCACAGCCAGCTATACTGCCTTTCTTTAAGCCTGTTGATTATGTGGAAGTTTTAGCTCGAATCCATGAAGAACTCGAGTCTTGTCCTCCGCAAGAGAGATCAAACTTGTTTTTGTTACAATACCAGGTCTTCAGGGGCCTTGGGGAAGTTAAATTGATGCGTAGAAGCCTCCAGGGAGCTTGGCAGAGAGCTCACACTGTTCATGAGAAGATTATATTTGGGGCATGGCTGAAATATGAGAAGCAAGAGGAAGAGCTAATGGCTGACTTGCTTGCAGCTTGTGGTAAATGTGCGAAGGAGTTTGCACCTGTAGATATAGCATTTCATCTTCCATTTGATGTAAATGCAAGTTCTGAGGGGAGAACGACCAATGAGAACCGCATTTCTCAAAATGTTACTTTTACGATTGGAAGTGAAAAGATAGTTTGTGATAGACAAAAAATTTCAGAACTTTCAGCACCATTTCATGCAATGCTCAAGGGGCATTTCAGTGAATCACTCTCTGAGACAATAGATTTGTCAGAAAACAATATCTCTCCCTCAGGTATGAAGGCAATAAGTGATTTCAGTTTGAATGGCAGTTTAATTGAGGTCCCTCCAAATCTTTTGTTGGAGATATTAGTTTTTGCAAACAAGTATTGTTGTGAAAGACTTAAAGATGCTTGTGATAGAAGACTTGCATCCTTAGTTTCCTCCAAAGAAGATGCTGTGGAGCTCATGGAATATGCTCTTGATGAACATTCAAGTGTCCTTGCTGCATCTTGTTTACAAGTCCTTTTGCGTGACCTTCCAAACTGTATGAATGACAATCGGGTGGTGGAGATATTTGTTCATGCTAATAAGCAGCAGCTAGAAGTCATGGTTGGGCCAGGTATATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACAGCTCATTTCCTGGAACGGTTAGTTGAGTTTGCTGAGAATGGCAAGCAGAGACTTCTAGCTTTACATCAATTGGGATGTGTAAGACTCTTAAGGAAAGAATATGATGAAGCACGTTGTCTTTTTGAAGGGGCTGTAAATGCAGGCCATATGTATTCTGTGGCAGGTTTAGCTAGACTGGACTATATAAAGGGTGACAAGCTGCTATCTTATGGGCAACTTAGCTCAGTCATTTCATCTGTTACTTCACTTGGATGGATGTATCAGGAAAGATCACTATACTGTGACGGTGACAAAAGGTGGGAGGACCTTGAGAAAGCAAGTAATTTGGATCCTACTCTTATATATCCTTACATGTACAGAGCTGCCACTTTAATGAGGACACAGAATGCTCATGCTGCACTAGCAGAAATCAATCGGATTCTTGGGTTCAAACTTTCACTAGAATGCTTGGAAATACGATTTTTTATCCACCTTTCTCTTGAGGACTATAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTCTGCGTTCAGATTATAGAATGTTTGAGGGGCGTGTTGCTGCATCCCAACTCTGTACTCTTGTGCGTGAGCATGTTGAACGTTGGACAACTGCAGATTGTTGGGCACGATTATATGATTGTTGGTCTGCAGTTGATGATATTGGATCTCTATCTGTTATCTACCAGATGCTTGAATCTGATGCAGCAAAAGGTATTCTATACTTCAGACAGTCATTGCTTCTCCTAAGGTTGAACTGTCCCGAGGCTGCTATGCGTAGTTTACTGTTAGCTCGGCAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATGAGGAAGGGCTCCAGAAAGCTGAAGAGTCTATTGACATCAAAAGATCTTTTGAGGCCTTTTTCCTGAAGGCCTATGCATTGGCTGACTCTAGTATAGATCCATCATGTTCACCAACTGTTATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTTAACAATCTTGGAAGTGTTTATGTTGACTGTGGTAAATTGGACTTGGCTGCTGATTGTTATATCAATGCTCTTAAAATCCGACACACCCGAGCTCATCATGGTCTTGCTCGCGTTCATTGTCTGAAAAATGATAAGGCTGCAGCTTATATGGAAATGACCGAACTTATTAAGAAGGCAAAAAACAATGCATCTGCTTATGAGAAGAGGTCTGAGTACTGTGATCGTGAACAAGCAAAGGCAGATCTGGAGATGGTCACTAGATTAGATCCACTTCGGGCCTATCCTTATAGATATCGTGCTGCAGTATTGATGGACAACCACAAGGAAGAGGAAGCCATTGCAGAACTCTCTAGAGCTATTGCGTTTAAAGCTGATTTGCACCTCTTGCATCTACGTGCAGCATTCCATGAACATAAAGAGGACGTCTTAGGTGCGCTAAGAGACTGTCGTGCTGCTCTCTCAGTTGATCCAAACCACCAAGAAATGCTGGAACTTCATAGTCGAGTCAATAGACACGAGCCATGA 2787 0.4194 MLCLRGKESEILSLSPNQKHKKKVKGCGAVVEIRDLFRLLCPMRSFFPAESCKEAHPNALNPQSWLHIERGKLPKLSSHPSSASIESLIKVPQPAILPFFKPVDYVEVLARIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHEKIIFGAWLKYEKQEEELMADLLAACGKCAKEFAPVDIAFHLPFDVNASSEGRTTNENRISQNVTFTIGSEKIVCDRQKISELSAPFHAMLKGHFSESLSETIDLSENNISPSGMKAISDFSLNGSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEHSSVLAASCLQVLLRDLPNCMNDNRVVEIFVHANKQQLEVMVGPGIFALFCFLSEVSMNLNSSSDTTAHFLERLVEFAENGKQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHMYSVAGLARLDYIKGDKLLSYGQLSSVISSVTSLGWMYQERSLYCDGDKRWEDLEKASNLDPTLIYPYMYRAATLMRTQNAHAALAEINRILGFKLSLECLEIRFFIHLSLEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGILYFRQSLLLLRLNCPEAAMRSLLLARQHASSEHERLVYEGWILYDTGHYEEGLQKAEESIDIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKAAAYMEMTELIKKAKNNASAYEKRSEYCDREQAKADLEMVTRLDPLRAYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNRHEP* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1323 928 SUPERFAMILY TPR-like 557 780 IPR011990 GO:0005515
Gso19g1323 928 PANTHER ETO1-LIKE PROTEIN 1 43 928 - -
Gso19g1323 928 Gene3D Potassium Channel Kv1.1; Chain A 213 361 IPR011333 -
Gso19g1323 928 Gene3D Tetratricopeptide repeat domain 401 588 IPR011990 GO:0005515
Gso19g1323 928 Gene3D Tetratricopeptide repeat domain 639 826 IPR011990 GO:0005515
Gso19g1323 928 SMART tpr_5 847 880 IPR019734 GO:0005515
Gso19g1323 928 SMART tpr_5 751 784 IPR019734 GO:0005515
Gso19g1323 928 SMART tpr_5 882 913 IPR019734 GO:0005515
Gso19g1323 928 SMART tpr_5 677 710 IPR019734 GO:0005515
Gso19g1323 928 Coils Coil 803 823 - -
Gso19g1323 928 SUPERFAMILY POZ domain 216 317 IPR011333 -
Gso19g1323 928 ProSiteProfiles TPR repeat profile. 751 784 IPR019734 GO:0005515
Gso19g1323 928 SUPERFAMILY TPR-like 423 585 IPR011990 GO:0005515
Gso19g1323 928 SUPERFAMILY TPR-like 734 919 IPR011990 GO:0005515
Gso19g1323 928 PANTHER ETO1-RELATED 43 928 IPR044631 GO:0010105
Gso19g1323 928 Gene3D Tetratricopeptide repeat domain 827 926 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1323 Gso-Chr19 41931547 41938484 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1323 - - gmx:100793740 1760.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1323 19 41931547 41938484 Gso3g1323 3 39112329 39119218 GST
Gso19g1323 19 41931547 41938484 Gso2g1196 2 14932295 14937356 PCT
Gso19g1323 19 41931547 41938484 Gso10g0256 10 2645394 2650093 PCT
Gso2g1196 2 14932295 14937356 Gso19g1323 19 41931547 41938484 PCT
Gso10g0256 10 2645394 2650093 Gso19g1323 19 41931547 41938484 PCT