Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1302 ATGCTTCCTCCTGAAAGTTCTAAACTCAACGCAATGGAGCTTAGCAAAGTCACGTTAGAGATCTTTTCAAAATTGGAGCAGCAATGGCTCTCGCACTACGAAGCATCAACCAAAACGCGCATTCTCAGCATTGACGGCGGAGGAACCACCGCCATTGTCGCCGGCGCCTCCCTCGTCCACCTCGAAGACCAGATCCGCGCCCAAACCTCCGATCCTCACACGCAAATCGCCGATTACTTCGACATTATCGCCGGAACCGGCATTGGCGCAATCCTCGCCTCCATGATCACCGCCGACGACGGTTTCGGCCGGCCTCTGTACTCCGCCAGAGACGCCGTCAACTTCCTCGCCGAAAACAACCGCGAACTCTACCAGCCGAAGCGCGCCGGCGTGCTCCGCCGACGCCGTAGATTCTCCGCGCGGAGCATGGAAGAGGCGCTGAAGCGCGTTTTCAAGAGGAAAGAGGGAGAAAAACTGTTGTTGACTCTGAAGGACACGTGTAAGCCGCTCCTTATCCCTTGCTTTGACCTCAAGAGCTCTGCGCCGTTCGTGTTCTCCCGAGCCGACGCGTCCGAGTCACCGAGCTTCAACTTCGAGCTTTGGAAGGCGTGCCGCGCCACGTCGGCGACCCCTGGCCTCTTCACTCCCTTCCACTTCTCCTCCGTCGACGGAAAAACCTCGTGCGCCGCCGTCGACGGCGGCCTGGTGATGAACAATCCGGCAGCAGCTGCCGTCACGCACGTCCTCCACAACAAGCGCGATTTCCCGTCGGTGAACGGCGTGGAGGATCTCCTCGTCCTGTCCATCGGAAACGGAGCTCAGGCGAAGAGAATGAACAACGCCGGCGAGTGCTCCACGTCGACGGTGGTTGACATTACGCTCGACGGCATTTCCGAGACCGTTGACCAGATGCTAGGGAACGCCTTCTGTTGGAACCGTATGGATTATGTCAGGATTCAGGCATTTGGTTTGGGAGATCAAGGAAAAGAAGAGAAGGTGCTGAACGAGAGAGTCCTGGAATCGTTACCGTTCGGGGGAAAGCGGTTACTGCAGGAGACTAACGGTAACAGAATCGAGAGCTTCGTGCAACGTCTTGTTGCTACTGGGAAGACAAGTCTTCCACCTAGTCCGTGCAAGCTTCCGCCGTAA 1149 0.5727 MLPPESSKLNAMELSKVTLEIFSKLEQQWLSHYEASTKTRILSIDGGGTTAIVAGASLVHLEDQIRAQTSDPHTQIADYFDIIAGTGIGAILASMITADDGFGRPLYSARDAVNFLAENNRELYQPKRAGVLRRRRRFSARSMEEALKRVFKRKEGEKLLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKACRATSATPGLFTPFHFSSVDGKTSCAAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLLVLSIGNGAQAKRMNNAGECSTSTVVDITLDGISETVDQMLGNAFCWNRMDYVRIQAFGLGDQGKEEKVLNERVLESLPFGGKRLLQETNGNRIESFVQRLVATGKTSLPPSPCKLPP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1302 382 Pfam Patatin-like phospholipase 42 244 IPR002641 GO:0006629
Gso19g1302 382 PANTHER PATATIN-LIKE PROTEIN 6 5 382 - -
Gso19g1302 382 CDD Pat17_PNPLA8_PNPLA9_like 41 342 - -
Gso19g1302 382 PANTHER PATATIN 5 382 - -
Gso19g1302 382 SUPERFAMILY FabD/lysophospholipase-like 38 353 IPR016035 -
Gso19g1302 382 Gene3D Cytosolic phospholipase A2 catalytic domain 28 373 - -
Gso19g1302 382 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 42 245 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1302 Gso-Chr19 41644008 41645577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1302 12 379 Acyl Lipid Metabolism Gene Families AT3G63200 68.984 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1302 - - gmx:100784729 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1302 19 41644008 41645577 Gso3g1299 3 38785315 38786879 GST
Gso19g1302 19 41644008 41645577 Gso2g1219 2 15188690 15190327 PCT
Gso19g1302 19 41644008 41645577 Gso10g0233 10 2423613 2425284 PCT
Gso2g1219 2 15188690 15190327 Gso19g1302 19 41644008 41645577 PCT
Gso10g0233 10 2423613 2425284 Gso19g1302 19 41644008 41645577 PCT