Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0936 ATGGGTGCGAGTCGAAAACTCCAGGGGGAGATAGATCGCGTTCTCAAGAAGGTCCAGGAAGGCGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACTGACAATGCTAACCAGAAGGAGAAATTTGAAGCGGACCTCAAGAAGGAGATTAAGAAGCTGCAGAGGTACAGAGACCAAATTAAGACTTGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAGCAGGCTTTGGTGGATGCACGCAAGATAATTGAGCGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACTAAGACCAAAGCATTCTCCAAAGAAGGCTTGGGTCAACAGCCTAAGACTGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCCCAAATTGATAACTTTGAAGCGGAGCTTGAAGGGCTTTCCGTTAAGAAAGGAAAGAGCAGGCCACCCAGATTGACACATTTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGGAGGTTAATGATGTCAAAGATTTCTTAGATGACTATGTTGAGCGTAATCAGGATGATTTTGATGAATTTGATGATGTTGACGAACTATACAGTTCATTACCTTTAGATAAGGTGGAGACTCTAGAAGATCTTGTTACAATTCCCCCTGGTCTTTCTAAGGTGGCACCTAGTCTTAGCTTGAAGAATACTTTGACAGTATCAGCATCACAATCAGCATCTGCATCGCAAACATCTGATACTTCTGTCCAGGAGCAAGCTGATGACACAACGTCCCAGGATAGCAATTCTGACATTGTTGCCAAAACTCCACCTTCTAAAAGTGGGGGAATTAGTTCTGCTACTTCAACTCCTGTTGACCATGCTACTCCTGTTTCTGTGAATGTTTCTGGTCATAACTTGTCTAGTGCACCTGTTGCAGTCCTACCTGGTTCAAATTCTGTGCGGAATGTCTTAGAGAATACTAATGTTATCAATTCATCATCTGTAAATCAGTCTACCTCTACAAATGAAGAAGAGATTAATAGCTTCCCTAGCCGGAGACCATCTCCATCGCTTTCTGATGCAACACTTTTGAGGGGCAGAAGCAGCCTGTCAAATCAAGCAACAGCCAGCATTCCTCTTGGTTCTGGAAACATGGTTTCTAGCAATGGTGCCCTTGGATCAGTCTCTTCAGCCTCTGAAATAGCTAAAAGGAACATATTGGGAGCTGATGATAGGCTTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCGCTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAATGATGGAACTGTTTTAGTTGACTCTAGTACTGTTAATGAAGCAGCAGCTGGGAGAGTTTTCTCCCCTTCTGGGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAGGCCAGCTTCGTGGAAGAACTGAAATAGCACCTGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAACAAGGGAATAGTACCCTCCTTAATATGAATAGTACCCTCCTTAATATGCCTTCTCTAGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAGTCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCGTTGGTATTTCTTCTGCTTCACTACAGCAGCCACCCAATCCTGTCCATTCCCCCTCTAGTCAACAGCCATTGATGCCAGGTGTTTCTATAGATGCAGATGTTGGCAATTCTAAGATTGAAGAACAGCAGCAGCATCAGAATTTCCCTGATGATTCAACAACAGAATCTACTGCTAGCACTGGGATTGGCAAGAATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCGATTTGTCTCCTGGCCAACCATTACAACCTAATCAACCTACTGGCAACCTTGGTGTCATTGGAAGAAGAAATGGTGCTGAACATGGAGCCATTGGTGATAATTTTAGTGGATCAAGTGTTAGTTCTGGTGGAGTGCGTGATCAATTATATAATTTGCAAATGCTTGAGGCAGCCCACTTCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCTAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTCGGTCTTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACTTGGTTTCAGCGGCATGAAGAGCCCAAAATTGCAACCGATGAATATGAGCAGGGAACTTATGTGTACTTTGATTTCCATATTGCAAATGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGATGATCTTCTTGTATAG 2688 0.4256 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKIIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVETLEDLVTIPPGLSKVAPSLSLKNTLTVSASQSASASQTSDTSVQEQADDTTSQDSNSDIVAKTPPSKSGGISSATSTPVDHATPVSVNVSGHNLSSAPVAVLPGSNSVRNVLENTNVINSSSVNQSTSTNEEEINSFPSRRPSPSLSDATLLRGRSSLSNQATASIPLGSGNMVSSNGALGSVSSASEIAKRNILGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGTVLVDSSTVNEAAAGRVFSPSGVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGNSTLLNMNSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLVGISSASLQQPPNPVHSPSSQQPLMPGVSIDADVGNSKIEEQQQHQNFPDDSTTESTASTGIGKNLINEDDSKSAFALDSPAGVSASLPESAQTSRDIDLSPGQPLQPNQPTGNLGVIGRRNGAEHGAIGDNFSGSSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPTITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0936 895 MobiDBLite consensus disorder prediction 599 620 - -
Gso19g0936 895 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Gso19g0936 895 Coils Coil 41 61 - -
Gso19g0936 895 PANTHER CCR4 NOT-RELATED 1 895 IPR040168 GO:0030015
Gso19g0936 895 MobiDBLite consensus disorder prediction 630 660 - -
Gso19g0936 895 PIRSF NOT_su_3_5 1 895 IPR012270 GO:0006355|GO:0030015
Gso19g0936 895 Gene3D - 735 890 IPR038635 -
Gso19g0936 895 MobiDBLite consensus disorder prediction 269 326 - -
Gso19g0936 895 Pfam NOT2 / NOT3 / NOT5 family 751 889 IPR007282 GO:0006355
Gso19g0936 895 MobiDBLite consensus disorder prediction 358 389 - -
Gso19g0936 895 MobiDBLite consensus disorder prediction 680 710 - -
Gso19g0936 895 MobiDBLite consensus disorder prediction 489 508 - -
Gso19g0936 895 MobiDBLite consensus disorder prediction 757 780 - -
Gso19g0936 895 PANTHER BNAA10G16600D PROTEIN 1 895 - -
Gso19g0936 895 MobiDBLite consensus disorder prediction 110 131 - -
Gso19g0936 895 MobiDBLite consensus disorder prediction 599 660 - -
Gso19g0936 895 Coils Coil 132 159 - -
Gso19g0936 895 MobiDBLite consensus disorder prediction 674 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0936 Gso-Chr19 36304297 36323697 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0936 K12580 - gmx:100785965 1705.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0936 19 36304297 36323697 Gso16g0348 16 3914832 3925769 GST
Gso19g0936 19 36304297 36323697 Gso16g1222 16 31544257 31558126 PCT
Gso19g0936 19 36304297 36323697 Gso2g0591 2 6163416 6174614 PCT
Gso16g1222 16 31544257 31558126 Gso19g0936 19 36304297 36323697 PCT
Gso2g0591 2 6163416 6174614 Gso19g0936 19 36304297 36323697 PCT