Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1222 ATGGGAGCGAGTCGAAAACTCCAAGGCGAGATTGATCGCGTTCTTAAGAAGGTTCAGGAAGGCGTCGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACCGATAATGCGAACCAGAAGGAGAAGTTCGAGGCGGACCTGAAGAAGGAGATTAAGAAGCTGCAGAGGTACAGGGACCAGATTAAGACTTGGATTCAGTCCAGTGAGATCAAAGACAAGAAGGTTAGTGCCTCATATGAGCAGGCTCTGGTGGATGCACGCAAGCTTATTGAGCGTGAAATGGAAAGATTCAAGATCTGTGAGAAGGAGACAAAGACAAAAGCATTCTCCAAAGAAGGCTTAGGTCAACAGCCTAAAACTGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGACTTTCTGTCAAGAAAGGAAAGAACAGGCCTCCCAGATTGACACATCTAGAAACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGCAGGTTAATGATGTCAAAGATTTCCTGGATGACTATGTAGACCGTAATCAGGACGACTTTGAAGAATTTAGTGATGTTGATGAGTTATATAGTTCATTACCCTTAGACAAGGTGGAGTCACTTGAAGATATTGTTACAATTCCCCCTGGTCCTGCTAAGGTGACACCTGTGCTTAGCTTGAAGCCTTCTGTGGCAGCTTCAGCTTCAGCATCACAAACATCTGAGCAAGCTGATGATACAGCTTCCCAGGATAGCAATTCTGATTTTGTCGCAAGAACTCCACCTCCTAAAAGTAGTATAGTTAGTCCTACTGCTACAACACCAGCAGGGAATTTTGCTACTCCTGTTTCTATGAATGTTCCTGTGCCTAACTTGTCGAGTCCACCAGCCATTGCATCAGTCATGCCTGGTTCAAATTCTGTTCAGAGTTCCTTGGAGATTAGTAGTCCTGTGGATGCTTCATCTTTTGTTAATCAGTCTAGCACTATGAAGGAGGAAGAGATTAATAGTTTCCCTGGTCAAAGACCATCTCCATCGCTTTCTGATGTTACACTCGTAAGGAACATCAGCAGAAACAGCGTATCAAATCAAGCAACAAATAGCATACCTCTTGCTTCTGGCAATATGGTTTCCAGCAATGGGCCCCTTGGTTCAGTGCCTTCTGCACCAGAAATAACCAAGAGAAACATATTGGTAGGTGATGATAGACTCGGAAGCAATGGGATGGTGCAGCCTCTTGTATCCCCTTTAAGTAATAGAATGATCATGCCTCAGGTTGCTAGGCCTAATGATGGAACTTCCTCAGTTGACTCTAGTAGTGTCAACGAAGCTGCAACTGTATCTGGGAGAGTGTTCTCCCCTTCTGCTGTTCCTGGCATGCAATGGAGATCTGGAAGCCCCTTCCAGAATCAGAATGATGTGGTTCAGGTTCAGGTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAGGTATTTGCAGAAGTTGCAGCAAGTGCAGCAACAAGGGCAAAGTGCCATTCTTAATATGCCATCTTTTGTAGCAGGGAATCCTAAGCAGTTTTCTGCTCAGCAACAAAATCCTCTCTTACAGCAGTTCAATTCTCAAGGCTCATCTGTTGCATCTCAATCTGGTGTGGGACTTGGAGTCCAGTCACCAGGTCTTAGTGGTATTGCTTCCACCTCATTACCGCAGCCACCAAATTCTGTCCATTCCCCATCTAGTCAACAGTCATTGCTATTAGTTGTTTCCAAAGATGCAGATGTTGGCAATTCTAAGGGTGACGAGCCACAACAACAGATTTTTCCTGATGATTCAGGGACTGAATCTACTGCTAGTAATGGGATTGGCAAGAATTTTGTGAATGAAGATGAATTGAAATCCACATATGCTGTAGATTCTCCTGCTGGAGTACCTGCCTCTCTTCCTGAGCCTGCTCAGACTTCTAGAGATATTGATTTGTCTCCTGGCCTACCTTTACAATCAAATCAGCGTACTGGTAACCTTGGTGTTATAGGAAGAAGTTCAACTGACCTTGGAGCTCTTGGTGACAACTTCAGTGCATCAACTGCTAATTCTGGCGGAGTTCGTGATCAATTATATTATTTACAGATGCTTGAGGCAGCCCACCTCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGGAGATATCACCGGAAGTATAACACATGGTTTCAACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAGGGAACGTATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAGCATGGCTGGTGTCAAAGAATCAAGACCGACTTCACCTTTGAATATAACTATCTTGAAGATGAGCCTATTGTCTAG 2667 0.4346 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELENQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVDRNQDDFEEFSDVDELYSSLPLDKVESLEDIVTIPPGPAKVTPVLSLKPSVAASASASQTSEQADDTASQDSNSDFVARTPPPKSSIVSPTATTPAGNFATPVSMNVPVPNLSSPPAIASVMPGSNSVQSSLEISSPVDASSFVNQSSTMKEEEINSFPGQRPSPSLSDVTLVRNISRNSVSNQATNSIPLASGNMVSSNGPLGSVPSAPEITKRNILVGDDRLGSNGMVQPLVSPLSNRMIMPQVARPNDGTSSVDSSSVNEAATVSGRVFSPSAVPGMQWRSGSPFQNQNDVVQVQVRGRTEIAPDQRERYLQKLQQVQQQGQSAILNMPSFVAGNPKQFSAQQQNPLLQQFNSQGSSVASQSGVGLGVQSPGLSGIASTSLPQPPNSVHSPSSQQSLLLVVSKDADVGNSKGDEPQQQIFPDDSGTESTASNGIGKNFVNEDELKSTYAVDSPAGVPASLPEPAQTSRDIDLSPGLPLQSNQRTGNLGVIGRSSTDLGALGDNFSASTANSGGVRDQLYYLQMLEAAHLKLPQPKDSERPRTYTPKHPTITPPSFPQVQAPIVNNPAFWERVGIEQYGTDTLFFAFYYQQNTYQQYMAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTDFTFEYNYLEDEPIV* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1222 888 MobiDBLite consensus disorder prediction 591 654 - -
Gso16g1222 888 Coils Coil 41 61 - -
Gso16g1222 888 PANTHER BNAA10G16600D PROTEIN 1 886 - -
Gso16g1222 888 MobiDBLite consensus disorder prediction 627 652 - -
Gso16g1222 888 MobiDBLite consensus disorder prediction 591 616 - -
Gso16g1222 888 MobiDBLite consensus disorder prediction 750 770 - -
Gso16g1222 888 PIRSF NOT_su_3_5 1 888 IPR012270 GO:0006355|GO:0030015
Gso16g1222 888 PANTHER CCR4 NOT-RELATED 1 886 IPR040168 GO:0030015
Gso16g1222 888 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Gso16g1222 888 Gene3D - 729 883 IPR038635 -
Gso16g1222 888 MobiDBLite consensus disorder prediction 110 131 - -
Gso16g1222 888 Coils Coil 132 159 - -
Gso16g1222 888 MobiDBLite consensus disorder prediction 667 703 - -
Gso16g1222 888 MobiDBLite consensus disorder prediction 688 703 - -
Gso16g1222 888 MobiDBLite consensus disorder prediction 268 306 - -
Gso16g1222 888 Pfam NOT2 / NOT3 / NOT5 family 745 882 IPR007282 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1222 Gso-Chr16 31544257 31558126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1222 K12580 - gmx:100819202 1662.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1222 16 31544257 31558126 Gso2g0591 2 6163416 6174614 GST
Gso19g0936 19 36304297 36323697 Gso16g1222 16 31544257 31558126 PCT
Gso16g0348 16 3914832 3925769 Gso16g1222 16 31544257 31558126 PCT
Gso16g1222 16 31544257 31558126 Gso19g0936 19 36304297 36323697 PCT
Gso16g1222 16 31544257 31558126 Gso16g0348 16 3914832 3925769 PCT