Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0348 ATGGGTGCGAGTAGAAAACTCCAGGGAGAGATAGATCGCGTTCTCAAGAAGGTTCAGGAAGGCGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACTGACAATGCTAACCAGAAGGAGAAATTTGAAGCGGACCTCAAGAAGGAGATTAAGAAGCTCCAGAGGTACAGAGACCAAATTAAGACTTGGATTCAGTCCAGTGAGATCAAAGACAAAAAGGTTAGTGCCTCATATGAGCAGGCTTTGGTGGATGCACGCAAGCTAATTGAGCGGGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACTAAGACCAAAGCATTCTCCAAAGAAGGCTTGGGTCAACAGCCTAAGACTGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCCCAAATTGATAGCTTTGAAGCAGAGCTTGAAGGGCTTTCTGTTAAGAAAGGAAAGACCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGGAGGTTAATGATGTCAAAGATTTCTTGGATGACTATGTTGAGCGTAATCAGGATGATTTTGATGAATTTGATGACGTTGATGAACTATACAGTTCATTACCTTTAGATAAGGTGGAGACTCTAGAAGATCTTGTTACAATTCCCCCTGGTCTTTCTAAGGTGGCACCTAGTCTTAGCTTGAAGAATACTTTGACAGTATCAGCATCACAATCAGCATCTGCATCGCAAACATCTGAGCAAGCTGATGACACAGAGTCCCAGGATAGCAATTCTGACATTGTTGCCAAAACTCCACCTCCTAAAAGTGGGGGAATTAGTTCTGCTACTTCAACTCCTGTTGGCAACCATGCAACTCCTGTTTCCGTGAATATTTCTGGTCATAACTTGTCTGGTGCACCTGTTGCAGCCCTACCTAGTTCAAATTCTGTGCGGAATGTCTTAGAGAATACTAATGTTACCAATTCATCATCTGTAAATCAGTCTACCTCTACAAAGGAAGAAGATATTAATAGCTTCCCTAGCCGGAGACCGTCTCCATCACTTTCTGATGCAACACTTTTGAGGGACAGAAACAGCCTATCAAATCAAGCAACAGCCAGCGTTCCTCTTGGTTCTGGAAACATGGTTTCTAGCAATGTGGCCCTTGGATCAGTCTCTTCAGCCTCTGAAATAGCTAAAAGGAACATAATGGGAGCTGATGATAGACTTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCGCTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAATGATGGAATTGTTTCAGTTGACTCTAGTACTGTTAATGAAGCCGCAGCCGGGAGAGTTTTCTCCCCTTCTGGGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAGGCCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAACAAGGGCATAGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTTGGTGGTATTTCTTCTGCTTCACTACAGCAGCCACCCAATCCTGTCCATTCCCCCTCTAGTCAACAGCCATTGATGCCAGATGTTGGCAATTCTAAGATTGAAGAACAGCAGCAGCATCAGAATTTCCCTGATGATTCAACAATAGAATCTATTGCTAGCACTGGGATTGGCAAGAATCTCATAAATGAAGATGATTCAAAATCAGCATATACTGTAGATTCTCCTGCAGCAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATTGATTTGTCTCCTGGCCAACCATTACAATCTAATCAACTAACTGGCAACCTTGGTGTCATTGGAAGAAGAAATGGTGCTGAGCATGGAGCCATTGGTGATAATTTTAGTGGGTCGAATGTTAGTTCTGGTGGAGTGCGTGATCAATTATATAATTTGCAAATGCTTGAGGCAGCCCACTTCAAAATTCCACTACCCAAAGACTCGGAACGTCCCAGGACTTACACTCCTAAGCACCCAGCAATTACACCTCCCAGCTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGGGTTGGTCTTGAACCATTTGGTACTGATACTCTGTTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACATGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCAACCGATGAATATGAGCAGGGAACTTATGTGTACTTTGATTTCCATATTGCAAATGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGATGATCTTCTTGTATAG 2637 0.427 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVETLEDLVTIPPGLSKVAPSLSLKNTLTVSASQSASASQTSEQADDTESQDSNSDIVAKTPPPKSGGISSATSTPVGNHATPVSVNISGHNLSGAPVAALPSSNSVRNVLENTNVTNSSSVNQSTSTKEEDINSFPSRRPSPSLSDATLLRDRNSLSNQATASVPLGSGNMVSSNVALGSVSSASEIAKRNIMGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGIVSVDSSTVNEAAAGRVFSPSGVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLGGISSASLQQPPNPVHSPSSQQPLMPDVGNSKIEEQQQHQNFPDDSTIESIASTGIGKNLINEDDSKSAYTVDSPAAVSASLPESAQTSRDIDLSPGQPLQSNQLTGNLGVIGRRNGAEHGAIGDNFSGSNVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPAITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0348 878 Coils Coil 41 61 - -
Gso16g0348 878 MobiDBLite consensus disorder prediction 663 689 - -
Gso16g0348 878 PANTHER BNAA10G16600D PROTEIN 1 878 - -
Gso16g0348 878 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Gso16g0348 878 PANTHER CCR4 NOT-RELATED 1 878 IPR040168 GO:0030015
Gso16g0348 878 MobiDBLite consensus disorder prediction 349 384 - -
Gso16g0348 878 Pfam NOT2 / NOT3 / NOT5 family 734 872 IPR007282 GO:0006355
Gso16g0348 878 Coils Coil 139 159 - -
Gso16g0348 878 MobiDBLite consensus disorder prediction 585 611 - -
Gso16g0348 878 PIRSF NOT_su_3_5 1 878 IPR012270 GO:0006355|GO:0030015
Gso16g0348 878 MobiDBLite consensus disorder prediction 110 131 - -
Gso16g0348 878 MobiDBLite consensus disorder prediction 268 319 - -
Gso16g0348 878 Gene3D - 718 873 IPR038635 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0348 Gso-Chr16 3914832 3925769 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0348 K12580 - gmx:100783415 1667.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0936 19 36304297 36323697 Gso16g0348 16 3914832 3925769 GST
Gso16g0348 16 3914832 3925769 Gso16g1222 16 31544257 31558126 PCT
Gso16g0348 16 3914832 3925769 Gso2g0591 2 6163416 6174614 PCT
Gso16g1222 16 31544257 31558126 Gso16g0348 16 3914832 3925769 PCT
Gso2g0591 2 6163416 6174614 Gso16g0348 16 3914832 3925769 PCT