Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0334 ATGGCTCACAGCTGCTCTGATGAGGATACTGATATTAGTGAATCTGAAATTAGTGAGTATGAAGATAAATCCTATGAAGAACTGAAAAATGGAAGTCAGGATGTGAGAACATCGGGCAAGACTTTCACTTGCCCCTACTGCCCTAAAAAGAGAAAGCAGGATTATTTATACAAGGAGCTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCACAAAAGAGAAAAGCAAGAGACAAGGCTAATCATTTGGCTTTAGTGAAATATTTGAAAAAGGATCTCATGAATGTAGATGTTCCATCAAATGATTCAAAACCGGAAGATGAAAGTGATCCTTCTGTTAATTCTAATGATCAGTTTGTGTGGCCTTGGATTGGAGTTGTAGTTAATATTCCAACTAGACGGACAGAAGATGGACGCTGTGTTGGTGAGAGTGGTTCTAGGCTGAGGGATGAGTACAGAAGCAGGGGTTTCAATCCAGTGCGAGTTAATCCTTTGTGGAATTTCCGGGGTCACTCTGGAACTGCTCTTGTGGAATTCAATAAAAACTGGCCAGGCTTACATAATGCATTGGCATTTGAAAGAGCATACGAATTAGATCATCATGGTAAAAAGGATTGGTTTACTAATTCTGGGCAGAAGTCTGGTCTTTATGCATGGGTTGCCCGGGCAGATGACTACAAGATGAACAGTATTTATGGAGAACATCTGCGAAGGATGGGTGATGTCAAAACCATATCCGAGCTTATGGAAGAAGAAGCTCGGAGGCAAGATAAACTTGTCTCGAATTTAACTAACATTATTCAGGTCAAGAATAAGCACTTAAAAGAGATAGAAGTGAGATGCCACGAGACTACAGATAAAATGAACCTTGTTATGAAGGATAAAGATAAACTCATTCAAGCTTATAATGAAGAGATACAGAAAATACAGTCAAGTGCCAGGGATCACTTCCAAAGGATTTTTACTGACCATGAAAAGCTCAAATTGCAACTGGAATCTCACAAAAATGAGCTTGAGTTACGGAAAGTTGAATTGGAAAAACGTGAGGCACATAACGAAAGTGAAAGAAAAAAGTTGGCAGAAGAAATTGAGGAGAATGCATCGAAAAATACCTCTCTTCAGATGGCTGCTTTAGAGCAAATGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAACAACTCCATGCTAAAATCATTCAGCTTCAAAAACAACTTGATATGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGTTCATTAAGTGTGCTGAAGCACATGGAAGATGACGAAGATGCAGAAATTCTGAATAAGGTAGATACACTACAAAAGGATTTAAGGGACAAGGAGCAGTCACTTCAAGACTTAGATGCATTGAACCAAACACTAATCATTAAAGAGCGTGAGAGTAATGATGAGTTGCAGGAAGCTCGACAAGCATTGGTTGATGCCATTAAAGAGTTGCAATCTCATGGAAATATTCGTTTGAAGAGAATGGGGGAACTTGATACTAGACCATTCCTTGAAGCAATGAAGCAAAGATATAATGAGGAGGATGCTGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGGAAGAATATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGAAAAGAAAAGGAAATTATTAGAGATGACGATGAAAAGCTGAATGGGTTGAAAAATGACTTGGGTGAAGGGGCATATAAAGCAGTGGTGGAAGCTTTGTTGGAAATAAATGAACATAATCCTAGTGGACGATACTTAACCTCAGTATTATGGAACTATAAACAAGGAAGGAGAGCAACTCTGAAAGAAGGAGTACAATTTCTGTCAAATCAATGGAAAGTTCTTAAACGCAAGAGGGGAATGACGGTTCTTTGGTTTGGAATAGAAATAATCAAAATAGTCACAGGGACCTTCTGTAGCAAAATGGTAGACTGTGATCATGAAGAGGAAGGTCCTAGTAAACAGAGCGAGGCTATTGTGAGCCTTGAGAGGGAAATTCAGAACCAGAATCAGAAATTTATGGATATGGAGCATAAGCACGCGGAGAAAGCTCTTATTATGGGTGAACTCATGGTTGGACTAGCACAGAACATTGATTCCAGGCAAAGAAATCTGTTGGAAATGGAAAAAAAAGATTCTAGGCCTGGTCCTGCATATCTAGTGACACTAAGACTTGTTTCTCCTGCATTTGTTGATCATGTAATGGAAATTACCTCTCTCCACATTGCTGCTGTGAAACAACAAAATGATTATGAAAATGCATTGAAACTGGGTGATGATTTAAAGGAGCAAGTTAAACAACTCAATGCTAAATTCATTGAAAAAGAATATCAACTGACAAGGAAACGAGAACTTGAACTTGAATATGACAAGGTAGTGAGCCTGTTGCTGTCACAGGAGACACTGAAACAAACAGAATGGAAAGATAAAATGAAAAATAACTATCTTATGGCTGCTGCTGTGAAGCAAACAAAAGCTGAAAGAAATGTTATCAAGGGTTGGCCATCAAAGGAGAAGAGGAAGGAATTGAAAAGCTTATTGTTGCATCCCTCTGTCTGGGAGAGTGAGTCCCTGCTGGAGGAAGAGAGGCAGAAGATGGCAGAGTTGGTCTTAGAACTGAAGGCCGAAAACGAGAGCTTGAAGGCCAAAAACAAAGAGCTGGAGAATTGGTCAGCAAAGATGGAGCTCCACAAATTTTGTGTTGAAATGTGCAAACACAGTTACAAGTGTAAGGAGGCTCTCAGCAAGCAGAGAATGGTTATTGAGAGCCTTCAGAGGGAGATTGAGTTCAAGAATCATAAGTTAATGGAGATGGAGCACAAACATAGTGAGACACTTACATCTGTGCGCAGACTTATTGTAGGGCTTGTGGAGAATATTAATTGCAAAGAAAGAAGTCTGCTTCAAATGGAATGCAAGCATAGTGAATCATTGAACATGGTTCAGAAGTTGATGAATGAGAGAGATAAATTGCAAGAAAGATGTCATCAAGATTTACAATTGACGAAGGTCACAAACGCTAATATGAATCATGACATGGAATGTCTAAAGAAAGACGATGGGCAGATTATCAAGGAACTGGAGGAGAGTAAAGCTCTACATGATCTACAACAGAACTTCATTGAGGAGATTGAAAAGTTGAAAACAGAGTTAGGAGATCAGAGTCATGTAAGAAGTGGTGGGGATTTGAACACTCAAATTTCTACTTTCAGAAATAAATTAAAGGACAAAATGGAATATTTGGACCATGTAGAAACCCTTTATAGTTCTTTAGTAGTTAAAGAGAACCAGTATAGACAAGAACTACATGATGCTCGTGAAGAATCTATAAAGAGTTTGCGAGGTATGTTCAGAGGTCGATCTCAACTTGGAATTAAGAGAATGGGAGAATTAGATCCAAAACCTTTTCAACATTTGTGCTTGCAAAAGTACTCAGATGAACAATGGCAGGAGAAATCTGCTAAGTTATGTTCAGCATGGGAGGAAAATCTGAAGGATCCAACTTGGCACCCTTTCAACAAAATTGAGGTCAATGGCATATTACAGGAAACATTAGATGAAAATGATGAAAAATTGAAAGGGCTGAGAAGTGAATGCGGTGAAGCTGTGTACCAGGCTGTAACAAATGCATTAATGGAAATAGAAGAATACAATTCAAGTGGAAGATATGCAATTGCTGAAATTTGGAACTGGAAGGAGGGAAGAAAAGCCACTTTGAAAGAAATTGTTCAACATATTATTAGGCAATTGAATAGTCACAAGCGCAAAAGAAAGTAG 3831 0.3881 MAHSCSDEDTDISESEISEYEDKSYEELKNGSQDVRTSGKTFTCPYCPKKRKQDYLYKELLQHASGVGQSSSQKRKARDKANHLALVKYLKKDLMNVDVPSNDSKPEDESDPSVNSNDQFVWPWIGVVVNIPTRRTEDGRCVGESGSRLRDEYRSRGFNPVRVNPLWNFRGHSGTALVEFNKNWPGLHNALAFERAYELDHHGKKDWFTNSGQKSGLYAWVARADDYKMNSIYGEHLRRMGDVKTISELMEEEARRQDKLVSNLTNIIQVKNKHLKEIEVRCHETTDKMNLVMKDKDKLIQAYNEEIQKIQSSARDHFQRIFTDHEKLKLQLESHKNELELRKVELEKREAHNESERKKLAEEIEENASKNTSLQMAALEQMKADENVMKLAEDQKRQKEQLHAKIIQLQKQLDMKQELELEIQQLKGSLSVLKHMEDDEDAEILNKVDTLQKDLRDKEQSLQDLDALNQTLIIKERESNDELQEARQALVDAIKELQSHGNIRLKRMGELDTRPFLEAMKQRYNEEDAEERASELCSLWEEYLKDPDWHPFKVIMVEGKEKEIIRDDDEKLNGLKNDLGEGAYKAVVEALLEINEHNPSGRYLTSVLWNYKQGRRATLKEGVQFLSNQWKVLKRKRGMTVLWFGIEIIKIVTGTFCSKMVDCDHEEEGPSKQSEAIVSLEREIQNQNQKFMDMEHKHAEKALIMGELMVGLAQNIDSRQRNLLEMEKKDSRPGPAYLVTLRLVSPAFVDHVMEITSLHIAAVKQQNDYENALKLGDDLKEQVKQLNAKFIEKEYQLTRKRELELEYDKVVSLLLSQETLKQTEWKDKMKNNYLMAAAVKQTKAERNVIKGWPSKEKRKELKSLLLHPSVWESESLLEEERQKMAELVLELKAENESLKAKNKELENWSAKMELHKFCVEMCKHSYKCKEALSKQRMVIESLQREIEFKNHKLMEMEHKHSETLTSVRRLIVGLVENINCKERSLLQMECKHSESLNMVQKLMNERDKLQERCHQDLQLTKVTNANMNHDMECLKKDDGQIIKELEESKALHDLQQNFIEEIEKLKTELGDQSHVRSGGDLNTQISTFRNKLKDKMEYLDHVETLYSSLVVKENQYRQELHDAREESIKSLRGMFRGRSQLGIKRMGELDPKPFQHLCLQKYSDEQWQEKSAKLCSAWEENLKDPTWHPFNKIEVNGILQETLDENDEKLKGLRSECGEAVYQAVTNALMEIEEYNSSGRYAIAEIWNWKEGRKATLKEIVQHIIRQLNSHKRKRK* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0334 1276 Coils Coil 382 436 - -
Gso18g0334 1276 MobiDBLite consensus disorder prediction 97 116 - -
Gso18g0334 1276 Coils Coil 769 789 - -
Gso18g0334 1276 CDD RRM_like_XS 120 227 IPR005380 GO:0031047
Gso18g0334 1276 Coils Coil 325 366 - -
Gso18g0334 1276 Pfam XS domain 118 228 IPR005380 GO:0031047
Gso18g0334 1276 PANTHER RIBONUCLEASE P SUBUNIT P38 50 639 IPR045177 GO:0080188
Gso18g0334 1276 PANTHER RIBONUCLEASE P SUBUNIT P38 756 808 IPR045177 GO:0080188
Gso18g0334 1276 PANTHER RIBONUCLEASE P SUBUNIT P38 1054 1275 IPR045177 GO:0080188
Gso18g0334 1276 PANTHER RIBONUCLEASE P SUBUNIT P38 1 50 IPR045177 GO:0080188
Gso18g0334 1276 MobiDBLite consensus disorder prediction 348 366 - -
Gso18g0334 1276 Coils Coil 677 697 - -
Gso18g0334 1276 Coils Coil 874 911 - -
Gso18g0334 1276 Coils Coil 939 959 - -
Gso18g0334 1276 Pfam XS zinc finger domain 44 87 IPR005381 GO:0031047
Gso18g0334 1276 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 756 808 - -
Gso18g0334 1276 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 50 - -
Gso18g0334 1276 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 639 - -
Gso18g0334 1276 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1054 1275 - -
Gso18g0334 1276 MobiDBLite consensus disorder prediction 1 36 - -
Gso18g0334 1276 Coils Coil 293 313 - -
Gso18g0334 1276 Coils Coil 448 500 - -
Gso18g0334 1276 Pfam XH domain 506 636 IPR005379 -
Gso18g0334 1276 Pfam XH domain 1144 1274 IPR005379 -
Gso18g0334 1276 Coils Coil 992 1019 - -
Gso18g0334 1276 Gene3D XS domain 113 283 IPR038588 -
Gso18g0334 1276 MobiDBLite consensus disorder prediction 348 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0334 Gso-Chr18 3156854 3171831 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0334 - - gmx:102665742 2489.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0334 18 3156854 3171831 Gso18g0334 18 3156854 3171831 ECH
Gso18g0334 18 3156854 3171831 Gso13g1283 13 28142442 28149984 GST
Gso18g0334 18 3156854 3171831 Gso14g0584 14 5695174 5704479 PCT
Gso18g0334 18 3156854 3171831 Gso2g2116 2 45744363 45752419 PCT
Gso14g0584 14 5695174 5704479 Gso18g0334 18 3156854 3171831 PCT
Gso2g2116 2 45744363 45752419 Gso18g0334 18 3156854 3171831 PCT