Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1283 ATGGCTCACAGCAGCTCTGATGAGGATACTGATATTAGTGAATCTGAAATTAGTGAGTATGAAGATAAATCCTATGAAGAACTGAAAAGTGGAAGCCAGGATGTGAAAACATCGGATGAGACTTTCACTTGTCCCTACTGCCCTAAAAAGAGAAAACGGGATTATTTATACAAGGAGCTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCCCAAAAGAGAAAAGCAAGAGACAAGGCTAATCATTTGGCTTTACTGAAATATTTGGAAAAGGATCTCATGAATGTAGATGTTCCATCAAATGATTCAAAACCTGAAGATGAAAGTGATCCTTCTGTTAATTCTAATGATCAGTTTGTGTGGCCTTGGATTGGAGTTGTAGTTAATATTCCAACTAGACGGACAGAAGATGGACGCTGTGTTGGTGAGAGCGGTTCCAGGCTGAGGGATGAGTACAGAAGCAGGGGTTTCAATCCATTTCGAGTCAATCCTTTGTGGAATTTCCGTGGCCACTCTGGAACTGCTCTTGTGGAATTCAATAAAAACTGGCCAGGCTTACATAATGCATTGGCATTTGAAAGAGCATATGAATTAGATCATCATGGAAAAAAGGATTGGTTTACTAATTCTGGGCTGAAGTCTGGCCTTTATGCATGGGTTGCCCGGGCAGATGACTACAAGATCAATAGTATCTATGGAGAACATCTGCGAAGGATGGGCGATGTCAAAACCATATCTGAGCTTATGGAAGAAGAAGCTCGAAGGCAAGATAAGCTTGTCTCGAATTTAACTAACATTATTCAGGTAAAAAATAAGCACTTAAAAGAGATAGAAGTGAGATGCCACGAGACTACAGACAAAATGAACCTTGTTATGAAGGATAAAGATCAACTCATTCAAGCTTATAATGAAGAGATACAGAAAATACAGTTAAGTGCCAGGGATCACTTCCAAAGGATTTTTACTGACCATGAAAAGCTCAAATTGCAACTGGAATCTCACAAAAATGAGCTTGAGTTGCGGAAAGTTGAATTGGAAAAACGCGAAGCACATAACGAAAGTGAAAGGAAAAAGTTGGCAGAGGAAATTGAGGAGAATGCATCGAAAAATAGCTCTCTTCAGATGGCTGCTTTAGAGCAAATGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAACAACTCCATGCTAAAATCATTCAGCTTCAAAAACAACTTGATGTGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGTTCATTAAGTGTGTTGAAGCACATGGAAGATGACGAAGATGCTGAAATTCTGAACAAGGTAGATACACTACAAAAGGATTTAAGAGACAAGGAGCAGTCACTTCAAGACTTAGATGCATTGAACCAAACACTAATCATTAAAGAGCGCGAGAGTAATGATGAGCTGCAGGAAGCTCGACAGGCATTGGTTGATGCCATTAAAGAGTTACAATCTCATGGAAATATTCGTTTGAAGAGAATGGGGGAACTTGATACTAGACCATTCCTTGAAGCAATGAAGCAAAGATATAATGAGGAGGATGCTGAAGAGAGAGCTTCAGAGCTGTGTTCATTGTGGGAAGAATATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGAAAAGAAAAGGAAATTATTAGAGATGACGATGAAAAGCTGAATGGGTTGAAAAATGACTTGGGTGAAGGGGCATATAAAGCAGTGGTGGAAGCTTTGTTGGAAATAAATGAACATAATCCTAGTGGGCGATACTTAACCTCGGTGTTATGGAACTATAAACAAGGAAGAAGAGCAACTCTGAAAGAAGGAGTACAATTTATATCGAATCAATGGAAAGTCCTTAAACGCAAGAAGGGAATGACATGA 1923 0.3937 MAHSSSDEDTDISESEISEYEDKSYEELKSGSQDVKTSDETFTCPYCPKKRKRDYLYKELLQHASGVGQSSSQKRKARDKANHLALLKYLEKDLMNVDVPSNDSKPEDESDPSVNSNDQFVWPWIGVVVNIPTRRTEDGRCVGESGSRLRDEYRSRGFNPFRVNPLWNFRGHSGTALVEFNKNWPGLHNALAFERAYELDHHGKKDWFTNSGLKSGLYAWVARADDYKINSIYGEHLRRMGDVKTISELMEEEARRQDKLVSNLTNIIQVKNKHLKEIEVRCHETTDKMNLVMKDKDQLIQAYNEEIQKIQLSARDHFQRIFTDHEKLKLQLESHKNELELRKVELEKREAHNESERKKLAEEIEENASKNSSLQMAALEQMKADENVMKLAEDQKRQKEQLHAKIIQLQKQLDVKQELELEIQQLKGSLSVLKHMEDDEDAEILNKVDTLQKDLRDKEQSLQDLDALNQTLIIKERESNDELQEARQALVDAIKELQSHGNIRLKRMGELDTRPFLEAMKQRYNEEDAEERASELCSLWEEYLKDPDWHPFKVIMVEGKEKEIIRDDDEKLNGLKNDLGEGAYKAVVEALLEINEHNPSGRYLTSVLWNYKQGRRATLKEGVQFISNQWKVLKRKKGMT* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1283 640 Coils Coil 382 436 - -
Gso13g1283 640 MobiDBLite consensus disorder prediction 97 116 - -
Gso13g1283 640 CDD RRM_like_XS 120 227 IPR005380 GO:0031047
Gso13g1283 640 Coils Coil 325 366 - -
Gso13g1283 640 MobiDBLite consensus disorder prediction 1 47 - -
Gso13g1283 640 MobiDBLite consensus disorder prediction 348 366 - -
Gso13g1283 640 MobiDBLite consensus disorder prediction 348 371 - -
Gso13g1283 640 Gene3D XS domain 113 283 IPR038588 -
Gso13g1283 640 Pfam XS domain 118 228 IPR005380 GO:0031047
Gso13g1283 640 MobiDBLite consensus disorder prediction 17 34 - -
Gso13g1283 640 Coils Coil 293 313 - -
Gso13g1283 640 Coils Coil 448 500 - -
Gso13g1283 640 PANTHER RIBONUCLEASE P SUBUNIT P38 1 50 IPR045177 GO:0080188
Gso13g1283 640 PANTHER RIBONUCLEASE P SUBUNIT P38 50 639 IPR045177 GO:0080188
Gso13g1283 640 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 639 - -
Gso13g1283 640 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 50 - -
Gso13g1283 640 Pfam XH domain 506 636 IPR005379 -
Gso13g1283 640 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1283 Gso-Chr13 28142442 28149984 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1283 - - gmx:100812353 1248.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0334 18 3156854 3171831 Gso13g1283 13 28142442 28149984 GST
Gso13g1283 13 28142442 28149984 Gso14g0584 14 5695174 5704479 PCT
Gso13g1283 13 28142442 28149984 Gso2g2116 2 45744363 45752419 PCT
Gso14g0584 14 5695174 5704479 Gso13g1283 13 28142442 28149984 PCT
Gso2g2116 2 45744363 45752419 Gso13g1283 13 28142442 28149984 PCT