Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0328 ATGCCTTTCATCTCCAAAATTCAGCGCCAATCCGATTACACCCTCTTTGGTTCCGCCACTCCCATCGTCATCGACAATGGCGCCTCCTATTTCCGCATTGGATGGGCAGGAGAGACTCAACCCCGTGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCCACAAAACAACCGGAGAAACCGTCACTATTGTTGGTGACCATGATCCAGCATTACTGAAATACTTTGACTGTACACGCTCTGGACCCCGCTCAGCATTTGACAGCAATGTTGTTTACCAGTTTGAAATAATGGAATATATTCTGGACTTTGGATTTGACCGGTTGGGTGCTACAGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAGTTCAGTCTCGTAGTAAAATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGACGCGGCATTCAGCTATAAATATAATCAACAGCAAGGTGTTTGTGATAAAGATGGTCTTGCAATGTGTCCTGGATTCAATACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATTTATAAAGGATGCTGTCGCACCAATATTGGTGGATTCCATGTGACCGATTATTTAAAACAACTTCTTTCACTCAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATATTGCCCCAGACTATGCTTCTGAAGCTCGGCTGTTTCAGAAAGGAGCTAAAGAGGCCGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAGACAAGGGCAAAGATTACGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTTTAAAACAGCTTGAACAAGTTGAAGACAGTAATGTTCCGTCTTTCCTAGCAGCAACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCACTAAAGTTACACAATCCTTACGGAAAGCAAAAGGTGAACCAAAGAACGAGCAAGCTGAAACTGATAAGGCCAGCCCTAATGCTAATGAAAAGTATTCTCTTATAAACATCCCTGATGACATGCTCACAACAGACCAGCTCATTGAAAAGAAGAAACAGTTATCACTGAAATCCATGTCTGAAGGGCGGCAGCGATTAAAACAGAAGCGTTATGAAGAGGAATTGGAGCGAGAAAGGAAACAACAGCTAGAGGATGAGAAACGCCTAGAGAATCCAGAGCTTTACTTGGAACAATTGCATGCTAGATACAAAGACCTTTCAGAGAAAGTTGACCAACGAAAACGGCTCAAGACAAATGGAGGTCATTCTAATGGAAATAACTTATCCGGTGGCATTGGTCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGAATGCGCCTCTTGACAACTGCTGCCTTTGATCGCGGCAAGGGTGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGGGCAAAGATAATGATGATGGTGATGAGGAACCAGATGAGGATGATGCAGAGCTAGCCCGCATCTCTTCAAGGCTACTGGACTTGGATCCAACATTTGTGCCCAACAAGTCAGAAACAGGTAGCTCTCAACCTGCCGAGGCACCACGTGCCCGCCCTCTCACCAAAGAAGATTTTCAGATTGTTTTTGGTGTTGAAAGGTTCAGGTGCCCCGAAATTTTGTTCAATCCAAACTGGATTGCGGTTGATCAGGCAGGGTTAGATGAGATGGCTGGGGTCTCAATAAGAAGGTTATCATGTAAGGATGAAAGCCTGGAAGAGAGACTCACTAGCTCCATACTTGTGACTGGTGGAAGTTCTCTTTTCCCCGGCATCATTGAACGCCTTGAAGCCGGAATTCGGATGATTCGGCCATGTGGAGCACCCATAAAAGTAGTTAGAGCACTGGATCCTGTTATGGATGCATGGCGTGGGGCTGCAGCGTTCGCATCAGCCCCACAATTCCATACACAAACTTTCAGTAGGATGGATTATTTCGAAAAGGGTGAAGACTGGCTCCGCAGTTATCAGATTAAATACTCATTGTAA 2172 0.4457 MPFISKIQRQSDYTLFGSATPIVIDNGASYFRIGWAGETQPRVVFRNIVQRPRHKTTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRLGATGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLAMCPGFNTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSLKYPYHMARFTWEKVEDLKMEHCYIAPDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSNVPSFLAATGYVSRQEIESARTKVTQSLRKAKGEPKNEQAETDKASPNANEKYSLINIPDDMLTTDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERERKQQLEDEKRLENPELYLEQLHARYKDLSEKVDQRKRLKTNGGHSNGNNLSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMGKDNDDGDEEPDEDDAELARISSRLLDLDPTFVPNKSETGSSQPAEAPRARPLTKEDFQIVFGVERFRCPEILFNPNWIAVDQAGLDEMAGVSIRRLSCKDESLEERLTSSILVTGGSSLFPGIIERLEAGIRMIRPCGAPIKVVRALDPVMDAWRGAAAFASAPQFHTQTFSRMDYFEKGEDWLRSYQIKYSL* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0328 723 MobiDBLite consensus disorder prediction 559 580 - -
Gso18g0328 723 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Gso18g0328 723 Gene3D - 18 170 - -
Gso18g0328 723 SMART actin_3 19 719 IPR004000 -
Gso18g0328 723 Coils Coil 449 469 - -
Gso18g0328 723 SUPERFAMILY Actin-like ATPase domain 19 159 IPR043129 -
Gso18g0328 723 PANTHER ACTIN-RELATED PROTEIN 5 12 715 IPR027664 -
Gso18g0328 723 Coils Coil 309 329 - -
Gso18g0328 723 MobiDBLite consensus disorder prediction 468 487 - -
Gso18g0328 723 Pfam Actin 588 715 IPR004000 -
Gso18g0328 723 Pfam Actin 19 363 IPR004000 -
Gso18g0328 723 Gene3D Actin; Chain A, domain 4 203 284 - -
Gso18g0328 723 Gene3D - 589 678 - -
Gso18g0328 723 MobiDBLite consensus disorder prediction 355 380 - -
Gso18g0328 723 SUPERFAMILY Actin-like ATPase domain 171 716 IPR043129 -
Gso18g0328 723 Coils Coil 419 441 - -
Gso18g0328 723 PANTHER ACTIN 12 715 IPR004000 -
Gso18g0328 723 MobiDBLite consensus disorder prediction 355 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0328 Gso-Chr18 3089224 3094888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0328 589 710 Miscellaneous Gene Families AT2G42100 33.607 2.04e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0328 K11672 - gmx:100808396 1392.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0328 18 3089224 3094888 Gso18g0328 18 3089224 3094888 ECH
Gso18g0328 18 3089224 3094888 Gso13g1287 13 28213801 28219855 GST
Gso18g0328 18 3089224 3094888 Gso14g0581 14 5669094 5673568 PCT
Gso18g0328 18 3089224 3094888 Gso2g2119 2 45769953 45775821 PCT
Gso14g0581 14 5669094 5673568 Gso18g0328 18 3089224 3094888 PCT
Gso2g2119 2 45769953 45775821 Gso18g0328 18 3089224 3094888 PCT