Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1287 ATGCCTTTCATCTCCAAAATTCAGCGCCAAACCGATTACACCCTCTTTGGTTCCGCCACTCCCATCGTCATCGACAATGGCGCCTCCTATTTCCGCATTGGATGGGCAGGAGAGACTCAACCCCGTGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCCACAAAACCACCGGAGAAACTGTCACTATTGTTGGTGACCATGATCCAGCATTACTGAAATACTTTGACTGTACTCGCTCTGGACCCCGCTCAGCATTTGACAGCAATGTTGTTTACCAGTTTGAAATAATGGAATATATTCTGGACTTTGGATTTGACAGGTTGGGTGCTACAGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTAAGCAACCCAGTTCAGTCTCGTAGTAAGATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCGGCATTTAGCTATAAATATAATCAACAACAAGGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCAATACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATTTATAAAGGATGCTGTCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTCAAATATCCTCATCATATGACTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATATTGCACCAGACTATGCTTCTGAAGCTCGGTTGTTTCAGAAAGGAGCTAGGGAGGCTGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAGACAAGGTCAAAGATTACGAGAAATGGCTGAGGCAAAGAGGTCATCTAAAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTTTAAAACAGCTTGAGCAAGTTCAAGACAGTAATGTTCCGTCTTTCCTAGCAGAGACCGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGTACTAAAGTTACACAATCCTTACGGAAAGCAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGATAAAGCCAGCCCTAATGCTAATGAAAAGTATTCTCTTATAAACATCCCTGATGACATGCTCACCCCAGACCAGCTCATTGAAAAGAAGAAACAGTTATCACTGAAATCCATGTCTGAAGGGCGGCAACGATTAAAACAGAAGCGTTATGAAGAGGAATTGGAGCGACAAAGGAAACAACTGCTAGAGGAGGAGACACGCTTAGAGAACCCAGAGCTTTACTTGGAAAAATTGCGTGCTAGATACAAAGACCTTTCAGTGAAAGTTGACCAACGAAAACGGCTCAAGACAAATGGAGGTCATTCTAACGGAAATAACTTGGCCGGTGCCATTGGTCGTGGTGAGAGACTCAATGCTGTTCAAAGGGAGAGAATGCGCCTCTTGACAACTGCTGCCTTTGATCGCGGCAAGGGTGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATATTGATGATGGTGATGAGGGACCAGATGAGGATGATGCAGAGCTAGCCCGCATCTCTTCAAGGCTACAGGACTTGGATCCAACATTTGTGCCCAACAAGTCAGAAGCAGGTAGCTCTCAACCTGCTGCTGAGGCCCAACGCGCCCGTCCTCTCACCAAAGAAGATTTTCAGATTGTTTTTGGTGTTGAAAGGTTCAGGTGCCCCGAAATTTTGTTCAATCCAAACTGGATTGCGGTTGATCAAGCAGGGTTACACGAGATGGCTGGGGTCTCAATAAGAAGGTTATCATGTAAGGATGAAGGCCTGGAAGAGAGACTCACTAGCTCCATACTTGTGACTGGTGGAAGTTCTCTTTTCCCCGGCATCACTGAACGCCTCGAAGCCGGAATCCGGATGATTCGACCATGTGGAGCACCAATAAAAGTTGTTAGAGCACTGGATCCTGTTATGGATGCATGGCGTGGGGCTGCAGCGTTTGCATCTGCCCCACAATTCCATACACAAACTTTCAGTAGGATGGATTATTTCGAAAAGGGTGAAGATTGGCTCCGCAATTATCAGATTAAATATTCATCGTAA 2175 0.4432 MPFISKIQRQTDYTLFGSATPIVIDNGASYFRIGWAGETQPRVVFRNIVQRPRHKTTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRLGATGSEIDHPVLITECVSNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLAMCPGFNTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSLKYPHHMTRFTWEKVEDLKMEHCYIAPDYASEARLFQKGAREAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSKINELENELHGLEFLLKQLEQVQDSNVPSFLAETGYVSRQEIESARTKVTQSLRKAKGEPKNEQAETDKASPNANEKYSLINIPDDMLTPDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERQRKQLLEEETRLENPELYLEKLRARYKDLSVKVDQRKRLKTNGGHSNGNNLAGAIGRGERLNAVQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDIDDGDEGPDEDDAELARISSRLQDLDPTFVPNKSEAGSSQPAAEAQRARPLTKEDFQIVFGVERFRCPEILFNPNWIAVDQAGLHEMAGVSIRRLSCKDEGLEERLTSSILVTGGSSLFPGITERLEAGIRMIRPCGAPIKVVRALDPVMDAWRGAAAFASAPQFHTQTFSRMDYFEKGEDWLRNYQIKYSS* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1287 724 MobiDBLite consensus disorder prediction 558 581 - -
Gso13g1287 724 Gene3D - 18 170 - -
Gso13g1287 724 PANTHER ACTIN 13 716 IPR004000 -
Gso13g1287 724 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Gso13g1287 724 SMART actin_3 19 720 IPR004000 -
Gso13g1287 724 Pfam Actin 19 360 IPR004000 -
Gso13g1287 724 Pfam Actin 589 716 IPR004000 -
Gso13g1287 724 PANTHER ACTIN-RELATED PROTEIN 5 13 716 IPR027664 -
Gso13g1287 724 Gene3D - 584 670 - -
Gso13g1287 724 Coils Coil 449 469 - -
Gso13g1287 724 Coils Coil 418 441 - -
Gso13g1287 724 Gene3D Actin; Chain A, domain 4 201 293 - -
Gso13g1287 724 MobiDBLite consensus disorder prediction 355 381 - -
Gso13g1287 724 Coils Coil 309 329 - -
Gso13g1287 724 SUPERFAMILY Actin-like ATPase domain 171 717 IPR043129 -
Gso13g1287 724 SUPERFAMILY Actin-like ATPase domain 19 159 IPR043129 -
Gso13g1287 724 MobiDBLite consensus disorder prediction 355 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1287 Gso-Chr13 28213801 28219855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1287 590 711 Miscellaneous Gene Families AT2G42100 34.426 1.23e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1287 K11672 - gmx:100813421 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0328 18 3089224 3094888 Gso13g1287 13 28213801 28219855 GST
Gso13g1287 13 28213801 28219855 Gso14g0581 14 5669094 5673568 PCT
Gso13g1287 13 28213801 28219855 Gso2g2119 2 45769953 45775821 PCT
Gso14g0581 14 5669094 5673568 Gso13g1287 13 28213801 28219855 PCT
Gso2g2119 2 45769953 45775821 Gso13g1287 13 28213801 28219855 PCT