Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1886 ATGTGTGTATATCTATATAGTCCCTTCTTTATAAACAACAAAAATAAGTCTCCAATTAAAAGCAATCCAACCCCCCACAAACCGCATTTCAGTTCAAGGCTTCAAATTGCGTGCACCTTAATTTCAAGAATGGCCAAAGCAGCAGAACAAAGTCCTGATTCTGGGAATGTGTACACGCTAGCTTCAGTGAGGGAGGATTTGGTTAGGCAAGAGGATACCATCATTTATGGTCTCATTGAGAGAGCCAAGTTCCCTAGCAATCCTCACACCTATGATGAAGAGTATGCTCAAATCCAGGGTTTTTGTGGCTCATTGGTAGAATTTGTTGTTAAGAATACAGAGGCCATTCAAGCTAAGGCTGGAAGATACAAAAACCCTGAAGAAAACGCCTTCTTCCCAGAAAATTTACCACCATCAATTGTACCATCTTACTCCTTCAAACAGTTTTTGCATCCTGGAGCTGCTTCAATTAACATTAACAAGTCCATCTGGAAAATGTATTTCCAAGAGTTACTTCCATTGCTTGCTACTTCGGGTGATGATGGAAACTATGCACAAACTGCAGCTAATGATCTTTCATTATTGCAGGCCATCTCTAGAAGGATTCACTATGGAAAGTTTGTAGCTGAGGTGAAATTCAGGGATGCTCCTCAAGACTACGAGCCTTTAATTCGAGCTAAGGATAAAGAAGGATTGATGAAATTGTTGACATTTACAAGCGTTGAAGAGACGGTGAGGAAGAGGGTTGAAAAGAAGGCCGCAGTGTTTGGGCAGGAAGTGAGTCTTGACAATGAGGACGATGATGAGGAAAACCATAAGTTTGATCCATCAGTGGCTTCTAGCTTGTACAAAAATTGGGTGATACCCTTTACCAAGGAGGTTCAGGTTGAGTACCTATTGCGGCGTCTAGACTGA 915 0.4153 MCVYLYSPFFINNKNKSPIKSNPTPHKPHFSSRLQIACTLISRMAKAAEQSPDSGNVYTLASVREDLVRQEDTIIYGLIERAKFPSNPHTYDEEYAQIQGFCGSLVEFVVKNTEAIQAKAGRYKNPEENAFFPENLPPSIVPSYSFKQFLHPGAASININKSIWKMYFQELLPLLATSGDDGNYAQTAANDLSLLQAISRRIHYGKFVAEVKFRDAPQDYEPLIRAKDKEGLMKLLTFTSVEETVRKRVEKKAAVFGQEVSLDNEDDDEENHKFDPSVASSLYKNWVIPFTKEVQVEYLLRRLD* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1886 304 SUPERFAMILY Chorismate mutase II 54 304 IPR036263 GO:0046417
Gso17g1886 304 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 52 304 IPR037039 GO:0004106|GO:0009073
Gso17g1886 304 ProSiteProfiles Chorismate mutase domain profile. 51 304 IPR008238 GO:0004106|GO:0009073
Gso17g1886 304 TIGRFAM CM_pl-yst: chorismate mutase 59 304 IPR008238 GO:0004106|GO:0009073
Gso17g1886 304 PANTHER CHORISMATE MUTASE 45 304 IPR008238 GO:0004106|GO:0009073
Gso17g1886 304 PIRSF Chor_mut_AroQ_eu 46 304 IPR008238 GO:0004106|GO:0009073
Gso17g1886 304 PANTHER CHORISMATE MUTASE 45 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1886 Gso-Chr17 37749660 37752977 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1886 K01850 - gmx:100808361 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0895 14 10553346 10556493 Gso17g1886 17 37749660 37752977 GST
Gso17g1886 17 37749660 37752977 Gso4g0520 4 4959305 4961763 PCT
Gso17g1886 17 37749660 37752977 Gso6g0515 6 4699393 4701643 PCT
Gso4g0520 4 4959305 4961763 Gso17g1886 17 37749660 37752977 PCT
Gso6g0515 6 4699393 4701643 Gso17g1886 17 37749660 37752977 PCT