Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1292 ATGAAAACAAGGAGAGGAAAACGCTCAGAGGCCTTTTGGCCTTCCCTTGTGATGAAGAAATGGTTAAACATAAAGCCAAAGGTGTATGATTTTAGTGAAGACGAAGTGGACACTGAAACTGAGAGTGAAGATGATGCTTGCTCTCTTAAAGATTCAAGACTTGGCGTGCGTGAAGATAATCGTCCACTTAGAACACAATCCATATTCCCAAGTCAAATATCAGACACACCGTGTAAGGGCTACAATACAAAACATAGAAGAGGGAAATCAGAAACTCTGCGTGTTCAATACATAAATACAAAGGAACTGAGGGTAACAATTGGCACATGGAATGTTGCTGGAAGAGCTCCAAGTAAGGATCTTGACATTGAGGACTGGCTTTGTACCAATGAGCCAGCAGATATTTACATTATTGGTTTCCAAGAGGTTGTCCCCCTGAGTGCTGGAAATGTTCTAGGGGCTGAGGATAACACACCCATCCGCAAATGGGAAGCGATCATCCGAAGAACTCTAAACAAATCTTCTGAACCTGAAAGCAAGCACAAAAGCTACAGTGCCCCTCATTCTCCTGTTCAAAAAACTTCTTCTTCTGCTTCTGTTAATGCTCTAGCAGACAGTGTAGATGTTAATCCACTAGACATGATGAATGAGGAGTATTTAGGAACTTTTGACAATGATGATCTAGAACAAGAGGAAGTGAAAAGCAGCATATTCGGTATAGGAAAGAATTTACAGCTGAGGAAAATACATGACATTGATCTTCAGACTATACTTGACTGGCCTGAACGTCCATTAGATGCAACTCCACATACTGATTCCAGTCCGAAATTGCGCCGAGTACTAAGCAGCTCAGAGAGAACCGGCTTTAGCTGGACAGATACTGCTTCAAAATATTCGAATGCAATGAAACGGTCACACCATAGTTCTGGAAATTTGGGCTTGTTATGGAAAGAGCAGAAAGTGATGCCTGAAGAAGTAATTGATATTATTGACGACTTATCTGACATGCTATCAGACGAGGAAGATGATGATGATTATTTTGAAGTAGCAAATGACAAAGAAGTTAATGGAATAAGTAAGGTGAAATCTCATCGTAAATATGTCCGGATTGTCAGCAAGCAGATGGTAGGAATATATGTGTCTGTTTGGGTGCAAAGGAGGTTGAGAAGGCACATTAATAACTTGAAAGTTTCTCCAGTTGGAGTTGGTCTTATGGGCTACATGGGAAACAAGGGGTCTGTTTCAGTTAGTATGTCTCTCTTTCAGTCACGTTTGTGCTTTGTTTGTTCCCATCTGACTTCTGGCCAGAAGGATGGGGCAGAAATAAGACGAAACGCAGACGTTCATGAAATTCTCCGCCGCACTTGTTTCTCATCCGTCTTTGATACAGATCAACCACAAACAATCCCATCTCATGATCAAATTTTCTGGTTTGGGGATTTGAATTATCGTATCAATATGATGGATGGGGAGGTTCGAAAGCTGGTAGCTCTAAAGAATTGGGATGAACTGATGAATTACGATCAGCTAAGTAATGAATTACGTAGTGGTCATGTGTTTGATGGATGGAAAGAGGGGTTGATAAACTTCCCACCCACATACAAGTATGATTTTAATTCTGATAAATACATTGGTGAGAACCCAAAAGAAGGGGAAAAGAAGAGATCTCCAGCCTGGTGTGATCGTATATTGTGGTTAGGAAAAGGAATAAAGCAACTTCAATACAGGCGTTCAGAAAATAAGCTCTCAGATCATCGACCAGTTAATTCAATATTCGCTGTTGATGTTGAAGTATTTGACCACCGCAAACTACAACGAGCACTGAATTTTACAAATGCAGCAGTACACCCTGAGGTTTTCCTTAAAGAAGATGGAGATTGGTCATATTAG 1890 0.4069 MKTRRGKRSEAFWPSLVMKKWLNIKPKVYDFSEDEVDTETESEDDACSLKDSRLGVREDNRPLRTQSIFPSQISDTPCKGYNTKHRRGKSETLRVQYINTKELRVTIGTWNVAGRAPSKDLDIEDWLCTNEPADIYIIGFQEVVPLSAGNVLGAEDNTPIRKWEAIIRRTLNKSSEPESKHKSYSAPHSPVQKTSSSASVNALADSVDVNPLDMMNEEYLGTFDNDDLEQEEVKSSIFGIGKNLQLRKIHDIDLQTILDWPERPLDATPHTDSSPKLRRVLSSSERTGFSWTDTASKYSNAMKRSHHSSGNLGLLWKEQKVMPEEVIDIIDDLSDMLSDEEDDDDYFEVANDKEVNGISKVKSHRKYVRIVSKQMVGIYVSVWVQRRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMSLFQSRLCFVCSHLTSGQKDGAEIRRNADVHEILRRTCFSSVFDTDQPQTIPSHDQIFWFGDLNYRINMMDGEVRKLVALKNWDELMNYDQLSNELRSGHVFDGWKEGLINFPPTYKYDFNSDKYIGENPKEGEKKRSPAWCDRILWLGKGIKQLQYRRSENKLSDHRPVNSIFAVDVEVFDHRKLQRALNFTNAAVHPEVFLKEDGDWSY* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1292 629 MobiDBLite consensus disorder prediction 172 200 - -
Gso17g1292 629 MobiDBLite consensus disorder prediction 185 200 - -
Gso17g1292 629 SUPERFAMILY DNase I-like 95 611 IPR036691 -
Gso17g1292 629 SMART i5p_5 289 600 IPR000300 GO:0016791|GO:0046856
Gso17g1292 629 Gene3D Endonuclease/exonuclease/phosphatase 322 619 IPR036691 -
Gso17g1292 629 Pfam Endonuclease/Exonuclease/phosphatase family 108 585 IPR005135 GO:0003824
Gso17g1292 629 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 7 623 IPR045849 GO:0004445|GO:0046855
Gso17g1292 629 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 7 623 - -
Gso17g1292 629 Gene3D Endonuclease/exonuclease/phosphatase 83 195 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1292 Gso-Chr17 12804278 12810560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1292 367 623 Acyl Lipid Metabolism Gene Families AT1G65580 31.000 2.39e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1292 K24221 - gmx:100794203 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0612 5 7359264 7366001 Gso17g1292 17 12804278 12810560 GST
Gso1g1718 1 53936553 53942706 Gso17g1292 17 12804278 12810560 PCT
Gso11g0359 11 3074748 3080643 Gso17g1292 17 12804278 12810560 PCT
Gso17g1292 17 12804278 12810560 Gso1g1718 1 53936553 53942706 PCT
Gso17g1292 17 12804278 12810560 Gso11g0359 11 3074748 3080643 PCT