Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0829 ATGGGTACTTTAGAACGCTTTTCAACTGAAGAAGATGAAAGACCTAGAAAGTTTTCGAAACTTTCAGATGATCCTGAGGAGGAGGATGCTATGCAGATTGATATGGGTTCTCTTTTAGCTTCCCAAGACCAAGGCAATGATCATCCGAAGCATGCACCCAAGAAGACGGGAAAGGTGGTGCGTGACCCAAAATGGCTTGTTAACGAGGATGTCTCAACCGGTGTTCTCCTTCACCTGTCAAGGTATGAGTATGGCTCAATTGCCTCACTGAACAGGAATTTCTTGTCTCTGATTAGATCAGGAGAACTCTACCGGGTCAGGCGGAAATTGGGAGTTGTAGAACACTGGGTTTACTTCTCTTGCAACATCCTTGAATGGGAGGTGTTTGATCCAATCAATGGCCATTGGATGCACTTGCCTAGAATGCCTTGCAATCCGTATGACTGCTTCGTGTTTTCTGATAAGGAGTCTTTGGCTGTTGGCACAGAACTTCTTGTGTTTGGAAGGGCAATAGAGGCTTGTATTGTTTATGAATATAGCCTCTTGACCAACAAATGGTCACATGGTATTCAGATGAGTGTTCCTAGATGCTTGTTTGCATCCGCGAGCCACGGTGAAAAGGCCATAGTTGCTGGTGGGAGTGCAGAGGGCAAGATCTTGAGTGTGGCTGAGCTTTATAACTCAGACACCAAGACATGGGAGGTTCTTCCAAACATGAACAAGGCAAGAAAAATGTGTTCTGGCGTGTTCATGGATGGGAAATTTTATGCCATCGGTGGAATGGGGGAAGATGGTAATAGGCTGACATGTGGTGAGGAGTATGATTTGGATACAAAAGAATGGCGTGTGATTCCTAACATGGTGCCTCCGCGAATCCAGGGACCAGATGGCCCTGAGGCACCTCCTTTGGTTGCGGTTGTGAACAATGTGCTGTATGCTGCAGATTATGCACAGATGGTGATGAGGAAGTATGTGAAAGAGAGGAACAATTGGGTCTACGTTGGAGGTCTTCCTGAGGGAGCATCCTCTGTGAATGGTTGGGGATATGCATTTCGTGCATGTGGAGATCGAATTGTTGTTATTGGTGGGGAAAGGACTATGGGTGGTGAAAGTATGGTTGAAATCAATTCTTGGATCCCTGCTCAAGGTGCACCACAGTGGAACTTGCTTGCCAGAAGGTGCATTGGTGGGAACTTTGTGTATAATTGCGCAGTCATGGGATGCTGA 1227 0.4637 MGTLERFSTEEDERPRKFSKLSDDPEEEDAMQIDMGSLLASQDQGNDHPKHAPKKTGKVVRDPKWLVNEDVSTGVLLHLSRYEYGSIASLNRNFLSLIRSGELYRVRRKLGVVEHWVYFSCNILEWEVFDPINGHWMHLPRMPCNPYDCFVFSDKESLAVGTELLVFGRAIEACIVYEYSLLTNKWSHGIQMSVPRCLFASASHGEKAIVAGGSAEGKILSVAELYNSDTKTWEVLPNMNKARKMCSGVFMDGKFYAIGGMGEDGNRLTCGEEYDLDTKEWRVIPNMVPPRIQGPDGPEAPPLVAVVNNVLYAADYAQMVMRKYVKERNNWVYVGGLPEGASSVNGWGYAFRACGDRIVVIGGERTMGGESMVEINSWIPAQGAPQWNLLARRCIGGNFVYNCAVMGC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0829 408 Pfam Kelch motif 242 287 IPR006652 GO:0005515
Gso17g0829 408 Pfam Kelch motif 195 240 IPR006652 GO:0005515
Gso17g0829 408 SMART kelc_smart 163 206 IPR006652 GO:0005515
Gso17g0829 408 SMART kelc_smart 254 309 IPR006652 GO:0005515
Gso17g0829 408 SMART kelc_smart 207 253 IPR006652 GO:0005515
Gso17g0829 408 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 14 408 - -
Gso17g0829 408 MobiDBLite consensus disorder prediction 1 58 - -
Gso17g0829 408 MobiDBLite consensus disorder prediction 1 26 - -
Gso17g0829 408 SUPERFAMILY Kelch motif 123 374 IPR015915 GO:0005515
Gso17g0829 408 Gene3D - 105 391 IPR015915 GO:0005515
Gso17g0829 408 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 14 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0829 Gso-Chr17 7783588 7786316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0829 70 246 EF-hand Containing Proteins AT4G39560 27.320 4.30e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0829 - - gmx:100807488 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0233 5 2424905 2427882 Gso17g0829 17 7783588 7786316 GST
Gso1g0387 1 5061755 5065036 Gso17g0829 17 7783588 7786316 PCT
Gso2g0883 2 10050968 10055592 Gso17g0829 17 7783588 7786316 PCT