Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0499 ATGCCGCCGGCTCAGATGGAACCGCCATTGCCGGAATCCTCGTTGGTGCCATCTTTTAGCTCCGACGCCGCTTCTCCGGGATCGGCGCCGGAGAGTCGGCGATTCGGGGATCTTAGAGGTTTGCAGTGGCGTATAAATCTTGGGGTGTTACCTTCTTCTTCTTCTTCTTCCATTGATGATCTTCGTCGTGCCACCGCTAATTCTAGAAGGAGGTATGCTAGTTTGAGAGGGCGCCTCCTTGTTGATCCTCATATGCCAAAGGATGGGAGTAGTTCACCCAATCTTGTCATGGACAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGATGGAGAAGATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAACTATTTCCAGACACCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCTCAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTTTGTTCTCCAATTTGATGTGGGGTGTCTTTCGGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTCTTTTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTTCAGACTTGATGGAGGATGAAATCAACTCCAATGGAAATGCAACGAAAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACAGAACATTGTATTGCTAAGTGACGCTTATGGGGCTGAAGGTGAACTGGGTGTGGTTTTATCTGACAAGTTCATTGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGGGCACGTGGTTCAATTGCAATGGCTGATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTTTGCATGGCCATCTCGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTCAGCAACCTCTTGATAATCTGGGATGAAATCTTTTCATCAGATAATAGTAAATTGGAAAAACATGCAGAGGACAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTCTCGCGGAGCATTTATCTCAGCTATGGCTGTAGCAATGATGCTTCATATAAGATCTTCGTTACTTGCAGCTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAGAACATTAACGTTGAAAAACTAATAGAGAAAGCTAAATCCTTGCTGGCTCTTGCATTAAGTACTGAGATTTCATCCTCAATGCCTTTATTTGTCGAGTATCATAACCAGGGTAAATCAGCTATTGCAAGATCTCGCACCCTTTCATCTGAATCAATTTCACCAAAAACTCCTCTGAATTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTGGTCCACAAGGCTGAAGAACTCAAACAAGATGGAGTAGAAAAACAGGTTCCTACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTGAAAAGAACGGAATCTGACCCCTCTTCATCAAGGATTAAGAGTGGTAAAAAGGAATCCAAGTCACCGGTTAGGCGATGTTTGTTAGAAGATCTTTCTAAGGAACTTGGCTTCGAGGAAGATACTGAAAAACTCTCTTGTCATGATGATCTGTCTGCCACAGTTGAAGAGGAGCAAGGGGAAGATGGCTCTGAAGGCAGCAACAACTATTCTCCTGAAGATAGATGTCAAAGTCAAAACACAAGTAGTGAGGAAAACTCACCTGTTATTTCTTGCCCAGCTAGTCCTACCAATGAGACCATTGATCACAAAAATGACTCCGAGAAAAGAAGTGTTGGGTCTAATTTATCCCTGGATATAACTAATGAAACTTCACTTAGTAGTCCCATTGATTCACCTCTTCCAATCTCTGATCATCCTGAGAAAGGACCTCAGACACCAGGGAGAAATAATATTAATAATTCTGCAGGGAATTCAACCACAAATTCTAAGGAGAGAAAATTGAACAAATTCCAGTGGCTATGGAAGTTTGGGCGGAATAATGGCGAGTTTATGTCAGAGAAAGGAGGTGATGCTTATGAGGCTGTAAAACCTGCCAACAATTGTAGCAACCAAAGTAACACAACACCCTCTTCTACAGCCAACAATTGTAATAGTCAAAGTAACACAGTACCCTCTTCTACAGCCCACAATTGTAATAATCAAAGTAACACAATACCCTCTTCTACAGCCAACTGTTGTAATAACCAAAGTAACATAATACCCTCTTCTACAGCCAACAATTGTAATAATCAAAGAAACATAATACCCTCTTCTACAGCCAATGGACATTGTAGTTCTGTTAGTTGCAAAGGGGAATCTACAGATCAGACTGTGATGGGCAGTATGAGGAATATTGGGCAGTCAATGCTTGAGCATATCCAGGTGATTGAGTGTGCTTTCCAACAAGACAGGAGCCAAGAAGCATCATTAGATAACATGTCTAAAATTGTTGTGGTTGGTAAAGCGCAGGTTAATGCCATGTCAGCTCTCAAGGAGCTCCGCAAAATTAGCAATCTTTTGTCTGAGATGTGA 2673 0.4209 MPPAQMEPPLPESSLVPSFSSDAASPGSAPESRRFGDLRGLQWRINLGVLPSSSSSSIDDLRRATANSRRRYASLRGRLLVDPHMPKDGSSSPNLVMDNPLSQNPDSTWSRFFRNAEMEKMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLFVLQFDVGCLSEVRKLYEDHFTDRFDDLFCQENDLSYSFDFRKSSDLMEDEINSNGNATKIKSLDELDPKIQNIVLLSDAYGAEGELGVVLSDKFIEHDAYCMFDALMNGARGSIAMADFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFSSDNSKLEKHAEDNADSGFRIFNSSRGAFISAMAVAMMLHIRSSLLAAENPTTCLQRLLNFPENINVEKLIEKAKSLLALALSTEISSSMPLFVEYHNQGKSAIARSRTLSSESISPKTPLNLVPDSYWEEKWRVVHKAEELKQDGVEKQVPTRKKGWTEKVKFSLKRTESDPSSSRIKSGKKESKSPVRRCLLEDLSKELGFEEDTEKLSCHDDLSATVEEEQGEDGSEGSNNYSPEDRCQSQNTSSEENSPVISCPASPTNETIDHKNDSEKRSVGSNLSLDITNETSLSSPIDSPLPISDHPEKGPQTPGRNNINNSAGNSTTNSKERKLNKFQWLWKFGRNNGEFMSEKGGDAYEAVKPANNCSNQSNTTPSSTANNCNSQSNTVPSSTAHNCNNQSNTIPSSTANCCNNQSNIIPSSTANNCNNQRNIIPSSTANGHCSSVSCKGESTDQTVMGSMRNIGQSMLEHIQVIECAFQQDRSQEASLDNMSKIVVVGKAQVNAMSALKELRKISNLLSEM* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0499 890 MobiDBLite consensus disorder prediction 533 553 - -
Gso17g0499 890 MobiDBLite consensus disorder prediction 1 35 - -
Gso17g0499 890 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 331 IPR035969 -
Gso17g0499 890 SMART tbc_4 25 417 IPR000195 -
Gso17g0499 890 Gene3D - 310 453 - -
Gso17g0499 890 MobiDBLite consensus disorder prediction 736 760 - -
Gso17g0499 890 Pfam Rab-GTPase-TBC domain 119 180 IPR000195 -
Gso17g0499 890 Pfam Rab-GTPase-TBC domain 270 370 IPR000195 -
Gso17g0499 890 MobiDBLite consensus disorder prediction 597 633 - -
Gso17g0499 890 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 744 - -
Gso17g0499 890 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 306 445 IPR035969 -
Gso17g0499 890 MobiDBLite consensus disorder prediction 644 665 - -
Gso17g0499 890 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 102 288 - -
Gso17g0499 890 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 744 - -
Gso17g0499 890 ProSiteProfiles TBC/rab GAP domain profile. 33 371 IPR000195 -
Gso17g0499 890 MobiDBLite consensus disorder prediction 677 698 - -
Gso17g0499 890 MobiDBLite consensus disorder prediction 574 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0499 Gso-Chr17 4530267 4535622 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0499 K18469 - gmx:100818700 1729.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0499 17 4530267 4535622 Gso17g0499 17 4530267 4535622 ECH
Gso13g0721 13 21495811 21501173 Gso17g0499 17 4530267 4535622 GST
Gso17g0499 17 4530267 4535622 Gso15g1360 15 14411371 14417123 PCT
Gso17g0499 17 4530267 4535622 Gso9g0501 9 5402183 5407967 PCT
Gso15g1360 15 14411371 14417123 Gso17g0499 17 4530267 4535622 PCT
Gso9g0501 9 5402183 5407967 Gso17g0499 17 4530267 4535622 PCT