Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0721 ATGCCGTCGGCTCTGATGGATCCTCCATTGCCGCAATCCTCGTCGGTGCCGTCTTTAAGCTCCGACGCCGCTTCTCCGGGATCGGCGCCGGATAGTCGGCGATTCGGGGATCTTAGAGGTTTGCAGTGGCGTATAAATCTTGGGGTGTTACCATCTTCTTCTTCTTCTTCTTTCATTGATGATCTTCGCCGTGCCACCGCTAATTCTAGAAGGAGGTATGCGAGTTTGAGAGTGCGCCTCCTGGTTGATCCTCATATGCCAAAGGATGGAAGTAGTTCACCCAATCTTGTCATGGACAACCCACTTTCACAAAATCCAGACAGTTCATGGAGTCGCTTTTTTCGCAATGCAGAGATGGAGAGGATGGTTGATCAGGATTTATCACGTTTATACCCCGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGAAGAATTTTATTACTATGGTGTCTCAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTTCTCCAATTTGATGTTGAGTGTCTTTTGGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGGCCTCTTTTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTTCAGACTTGATGGAGGATGAAATTGACTCCTATGAAAATCTAACGAAAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACAGAACATTGTATTGCTAAGTGACGCTTATGGGGCTGAAGGTGAACTGGGTGTTGTTTTATCTGAGAAATTCATCGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGGGCACGTGGTTCAATTGCAATGGCTGATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCGTTGTATCATTTGTTGTCTCATGTGGATTCATTTTTGCATGGCCATCTCGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTCAGCAACCTCTTGATAATCTGGGATGAAATCTTTTCATCAGATAATAGTAAAGTGGAAAAACATGCCCAGGACAATGCAGACTCAGGTTTTAGGATCTTCAATTCGTCTCGTGGAGCATTTATCTCAGCTATGGCTGTAGCAATGATGCTTCATATAAGATCTTCGCTGCTTGCAGCTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAGAACACTAACGTTGAAAAACTAATAGAGAAAGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTGAGATTTTATCCTCAATGCCTTCATTTGTCGAGTGTCATACCAAGGGTAAATCAGCTATTGCAAGATCTCGCACCCTTTCATCTGAATCAATTTCACCAAAAACTCCTCTGACTTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAAGATGGAGTAGAAAAACAGGTTCCTACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGCTCAGTTTGAAAAGAACAGAATCTGACCCCTCTTCATCAAGGACTAAGAGTGGTAAAAAGGAATCCAAGTTGCCGGTTAGGCGATGTTTGTTAGTAGATCTTTCTAAGGAACTTGGCTTTGAGGAAGATACTGAAAAACTCTGTTGTCATGATAATCTGTCTGCAACGGTTGAAGAGGAGCAACGGGAAGATGGCTCCGAAGGCAGCAACAACTATTCTCCTGAAGATAGATGTCTAAGTCAAAACACAAGTAGTGAGGAAAACTCACCTGTTATTTCTTGCCCAGCTAGTCCTCCTAATGAGGCCAATGATCACAAAGATGACTCCCAGAAAAGTAGTGTTGGGTCTAATTTATCCCTTGATATAATAAATGAAACTTCACTTAGTAGTAGTCCCATTGATTCACCTCTTCCAATCTCTGATCATCCTGATAACGGACCTCAGACACCAGGGAGAAATAATATTAATAATTCCGCTGGAAATTCAACCACAAATTCTGAGAGAAAATTGAACAAATTCCAGTGGCTATGGAAGTTTGGCCGGAATAATGGCGAGTTTATGTCAGAGAAAGCAGGTGATACTTCTGAGGCTGCAAAACCTGCCAACAATTGTAACAATCAAAGTAACACAACACCCTCTTCTACAGCCAACAATTGTAATAATCATAGTAACACAATACCCTCTTCTACAGCCAAAAATTGTAATAATCAAAGTAACATAATACCCTCTTCTACAGCCAATGGACACCGTAGATCTGTTAGTTGCCAAGGGGAATCTACTGACCAGAATGTGATGGGCACTATCAGGAATATTGGACAGTCAATGCTTGAGCATATCCAGGTGATTGAGTGTGCTTTCCAACAAGACCGGGGCCAAGGAGCATCATTAGATAACATGTCTAAAAATGCTGTGGTTGGTAAAGGGCAGGTTAATGCCGTGTCAGCTCTCAAGGAGCTCCGCAAAATTAGCAATCTTTTGTCTGAGATGTGA 2586 0.4246 MPSALMDPPLPQSSSVPSLSSDAASPGSAPDSRRFGDLRGLQWRINLGVLPSSSSSSFIDDLRRATANSRRRYASLRVRLLVDPHMPKDGSSSPNLVMDNPLSQNPDSSWSRFFRNAEMERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLYVLQFDVECLLEVRKLYEDHFTDRFDGLFCQENDLSYSFDFRKSSDLMEDEIDSYENLTKIKSLDELDPKIQNIVLLSDAYGAEGELGVVLSEKFIEHDAYCMFDALMNGARGSIAMADFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSFLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFSSDNSKVEKHAQDNADSGFRIFNSSRGAFISAMAVAMMLHIRSSLLAAENPTTCLQRLLNFPENTNVEKLIEKAKSLQALALSTEILSSMPSFVECHTKGKSAIARSRTLSSESISPKTPLTLVPDSYWEEKWRVVHKAEELKQDGVEKQVPTRKKGWTEKVKLSLKRTESDPSSSRTKSGKKESKLPVRRCLLVDLSKELGFEEDTEKLCCHDNLSATVEEEQREDGSEGSNNYSPEDRCLSQNTSSEENSPVISCPASPPNEANDHKDDSQKSSVGSNLSLDIINETSLSSSPIDSPLPISDHPDNGPQTPGRNNINNSAGNSTTNSERKLNKFQWLWKFGRNNGEFMSEKAGDTSEAAKPANNCNNQSNTTPSSTANNCNNHSNTIPSSTAKNCNNQSNIIPSSTANGHRRSVSCQGESTDQNVMGTIRNIGQSMLEHIQVIECAFQQDRGQGASLDNMSKNAVVGKGQVNAVSALKELRKISNLLSEM* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0721 861 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 792 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 1 35 - -
Gso13g0721 861 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 307 447 IPR035969 -
Gso13g0721 861 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 792 - -
Gso13g0721 861 Gene3D - 311 454 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 724 790 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 590 647 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 678 700 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 8 27 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 603 628 - -
Gso13g0721 861 Pfam Rab-GTPase-TBC domain 120 200 IPR000195 -
Gso13g0721 861 Pfam Rab-GTPase-TBC domain 272 371 IPR000195 -
Gso13g0721 861 SMART tbc_4 25 418 IPR000195 -
Gso13g0721 861 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 296 IPR035969 -
Gso13g0721 861 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 103 288 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 730 790 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 659 700 - -
Gso13g0721 861 MobiDBLite consensus disorder prediction 528 552 - -
Gso13g0721 861 ProSiteProfiles TBC/rab GAP domain profile. 33 372 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0721 Gso-Chr13 21495811 21501173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0721 K18469 - gmx:100816501 1677.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0721 13 21495811 21501173 Gso17g0499 17 4530267 4535622 GST
Gso13g0721 13 21495811 21501173 Gso15g1360 15 14411371 14417123 PCT
Gso13g0721 13 21495811 21501173 Gso9g0501 9 5402183 5407967 PCT
Gso15g1360 15 14411371 14417123 Gso13g0721 13 21495811 21501173 PCT
Gso9g0501 9 5402183 5407967 Gso13g0721 13 21495811 21501173 PCT