Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1360 ATGCCGCCGGCGCTGTCCGATCCGCTGTCGGTGACTCCGGCGAGCTCCGACGCTGTTTTGCAGCGATCGGCGCCGGACAATCGGCGATTCGGTGATCTTAGAGGGCTGCAGTGGCGGATAAATCTTGGGGTGTTGCCGTCTTCCTCTTCGACTTCAATTGATGATCTTCGTCGAGTCACCGCTAATTGTAGAAGAAGGTATGCTAGCTTGAGAAGGCGCCTACTGGTTGAACCACATGTTCCAAAGGATGGAACTAATTCACCCAATCTTGTCATTGACAATCCACTTTCACAGAATCCAGATAGTACGTGGGGTCGTTTCTTCCGCAATGCCGAGCTGGAGAGAATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAGTTATTTTCAGACTCCAGGATGCCAAAGCATGTTGAGACGAATTTTATTACTGTGGTGTCTTAGGCACCCAGAATGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCATCTTTTGGAAGTTCGGAAGCTTTACGAAGATCACTTTACTGACAGATTCGATGGCCTTTTATGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAAAAAATCTCCAGAATTGATGGAGGATGAATTTGGTTCTCATGGAAATTCTGTGAAAGGCAATAGTCTTGAGGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGACGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCGTGGAGCATGATGCTTACTGTATGTTTGATGCTTTGATGAGTGGGGCCCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTCATCCCCTGTATCTGGGTCCCATAGTGGCCTGCCTCCTGTTATTGAGGCTTCTACTGCATTGTATTATTTGTTGTCTCTTGTAGATTCATCTCTCCATACCCATCTTTTTGAACTTGGGGTTGAGCCCCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTTGCCAACCTCTTGATCATATGGGATGAGATCTTTGCATCGGAGAATAGCAGCATGGGAAAAGGTGCTGATGACTGTGAGTTCAGGATCTTAAACTCACCTCGTGGAGCATTTATCTCAGCTATGGCAGTAGCTATGTTACTTCATTTAAGATCTTCACTACTTGCAACTGAAAACCCTACAAGGTGTCTTCAGAGATTATTAAACTTCCCTGAAGACATTAATATTGAAAAACTACTAGAGAAGGCTAAATCCTTGCAGGCTTTTGCACTGAGTGTGGATATTTCATCCTCATCACTTTTGTTTCTTGGGTCTCATTACCAAAGTAAATCTATGTATACTACATCTGTGACCCTTCCATCTGAATCTGTGTCTCCGAAAACTCCTCTGAATTTGTTACCTGATAGCTATTGGGAAGAAAAGTGGAGGGTTGCCCACAAGGCTGAAGAACTCAGGCAAGATAGTCTAGAAAAACAGGTTCCCACTCGGAAAAAGGGATGGACAGAAAAGGTAAAATTCAGTTTGAGAAGAGCAAAATCTGACCCTCCTTTGTCAAGGATTCAGAGTGGCAGAAATTTTAGGCGCAGTTTGTTGGAAGATCTTCGCAAGGCACTTGGCTCAGAGGAAGATGCTGAGAAAATGCAGCCCGATGAAACACTACGCCAGCATGATAATCCTTCTGAAGCAGTTGAAGTAAAAGAAGATAATGGCTGTAGTGGTGACAACAATTACTTGTCTGATGATAGATCTCCAAGTGGAAATTCTGGCAGTGAGGAAGACTTGTCTATATATTCTGAGCCAACTAGTCCCCCTAATGAGGCCAATGATCATGAAATTACCTCAGTGAAAAGTAGTGTTGCATCTAATTCACCCCTAGACGAATGCAATGAAACTTCAGGTACCAGTTCCTCATTTCCAATCTCCAATCTTCCAGAGAACATTTCTCAGACATCACAGTGCAATACAGAAAATTCTGAATGCAACGAAACTTTGCATACCAGTCCCAATGATCCACCCCTTCCAATCTCCGATCCTCCTGAGAACATTTCTCAGACATCACGGTGCAATACAGAAAATTCTGAATGCAATGAAACATCAGATACCCGTCCCAGTGATCTGCCCCTTCCAATCTCCGATCCTCCGAAGAACATACCTCCAACATCAGGGTGCAAGAACGATGAAGCAGGAAATACAGCCACTCTTCCTAAAGACAAAAAACAGAATAAGTTGCAGTGGTTTTGGCCGTTTGGACGGAATAATGCTGAGGCAATCTCTGAGAAAGCAGGAGGTGCTGCAGAAGCTGCCAACCGCGATAGCACTCAAAACAATACTCCACAACCAGCCTCATCTGTAGCTAATGAGCCTTGTAGTTCTGTTAGTTGCAGTGGGGAATCTGTTGACAAGAATGTGATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTAGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGCAAAGGGCAAGTTACTGCCATGACAGCTCTCAAAGAGCTTAGGAAAATTAGCAATATTCTGTCTGAGATGTGA 2613 0.4351 MPPALSDPLSVTPASSDAVLQRSAPDNRRFGDLRGLQWRINLGVLPSSSSTSIDDLRRVTANCRRRYASLRRRLLVEPHVPKDGTNSPNLVIDNPLSQNPDSTWGRFFRNAELERMVDQDLSRLYPEHGSYFQTPGCQSMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDLEHLLEVRKLYEDHFTDRFDGLLCQENDLSYSFDFKKSPELMEDEFGSHGNSVKGNSLEELDPEIQTIVLLSDAYGAEGELGIVLSEKFVEHDAYCMFDALMSGAHGSVAMADFFSSSPVSGSHSGLPPVIEASTALYYLLSLVDSSLHTHLFELGVEPQYFSLRWLRVLFGREFSLANLLIIWDEIFASENSSMGKGADDCEFRILNSPRGAFISAMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIEKLLEKAKSLQAFALSVDISSSSLLFLGSHYQSKSMYTTSVTLPSESVSPKTPLNLLPDSYWEEKWRVAHKAEELRQDSLEKQVPTRKKGWTEKVKFSLRRAKSDPPLSRIQSGRNFRRSLLEDLRKALGSEEDAEKMQPDETLRQHDNPSEAVEVKEDNGCSGDNNYLSDDRSPSGNSGSEEDLSIYSEPTSPPNEANDHEITSVKSSVASNSPLDECNETSGTSSSFPISNLPENISQTSQCNTENSECNETLHTSPNDPPLPISDPPENISQTSRCNTENSECNETSDTRPSDLPLPISDPPKNIPPTSGCKNDEAGNTATLPKDKKQNKLQWFWPFGRNNAEAISEKAGGAAEAANRDSTQNNTPQPASSVANEPCSSVSCSGESVDKNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAMTALKELRKISNILSEM* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1360 870 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 739 808 - -
Gso15g1360 870 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 522 - -
Gso15g1360 870 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 739 808 - -
Gso15g1360 870 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 9 522 - -
Gso15g1360 870 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
Gso15g1360 870 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 101 283 - -
Gso15g1360 870 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 302 438 IPR035969 -
Gso15g1360 870 Gene3D - 305 444 - -
Gso15g1360 870 MobiDBLite consensus disorder prediction 786 808 - -
Gso15g1360 870 MobiDBLite consensus disorder prediction 741 756 - -
Gso15g1360 870 MobiDBLite consensus disorder prediction 778 808 - -
Gso15g1360 870 MobiDBLite consensus disorder prediction 590 688 - -
Gso15g1360 870 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Gso15g1360 870 SMART tbc_4 25 409 IPR000195 -
Gso15g1360 870 MobiDBLite consensus disorder prediction 558 759 - -
Gso15g1360 870 MobiDBLite consensus disorder prediction 697 723 - -
Gso15g1360 870 Pfam Rab-GTPase-TBC domain 114 175 IPR000195 -
Gso15g1360 870 Pfam Rab-GTPase-TBC domain 265 367 IPR000195 -
Gso15g1360 870 MobiDBLite consensus disorder prediction 558 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1360 Gso-Chr15 14411371 14417123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1360 K18469 - gmx:100812967 1704.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1360 15 14411371 14417123 Gso9g0501 9 5402183 5407967 GST
Gso13g0721 13 21495811 21501173 Gso15g1360 15 14411371 14417123 PCT
Gso17g0499 17 4530267 4535622 Gso15g1360 15 14411371 14417123 PCT
Gso15g1360 15 14411371 14417123 Gso13g0721 13 21495811 21501173 PCT
Gso15g1360 15 14411371 14417123 Gso17g0499 17 4530267 4535622 PCT