Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1195 ATGGCTTGTGAAAATGACAACAACAACAAAGGCCTATTACTTGCCCTAGGGCTAGTACTTTGTGTCACCCTGTCCTTCTTCCCAAGGGTCACAGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGTCTCACGAGGGGTTTCAAGTTTTGCAACACGCACGTGCCAATCCACGTGAGGGTGCAGGACCTCATTGCGAGGCTCACATTGCCGGAGAAGATCAGGCTCGTGGTCAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGCTACGAGTGGTGGTCCGAGGCTCTCCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTCGGCGGAGCCTTCCCCGGCGCCACCATGTTCCCTCAGGTCATCTCGACCGCTGCTTCGTTCAATCAGTCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCAACACTGGCCGCGAAATACGCCGCCAGCTATGTCAAAGGACTTCAAGGCGACAGTGCCGGAAACCACCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAGGATTTGGAGGATACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGGCAAGTGGCGAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCAGATCTCCTTCGCAACACTATTCGTGGCCAATGGCGCCTCAATGGGTATATTGTCTCAGACTGTGATTCAGTTGGAGTTTTCTTTGACAACCAACACTACACAAAAACACCTGAAGAGGCAGCTGCTGAGGCCATTAAAGCGGGTCTAGACTTGGATTGTGGCCCATTTTTGGCTATCCACACTGATTCTGCCATTAGGAAAGGGCTTATTTCCGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTTCGGTCCAAATGAGATTGGGTATGTTCGACGGCGAACCGTCAACCCAACCATACGGAAACCTAGGCCCAAGAGATGTGTGCACCTCGGCCCATCAACAATTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTCTTACTACAAAACAAAGGAAACTCCCTACCATTATCCCCTTCAAGACTTCGTACTATAGGTGTCGTTGGACCCAATGCTGATGCTACCGTTACAATGATTGGGAACTATGCTGGTGTGGCATGTGGTTATACCACTCCTTTGCAAGGAATTGCGAGGTATGTGAAGACGGCTCATCAAGTGGGGTGTAGGGGTGTGGCTTGTAGGGGAAATGAACTATTTGGGGCTGCAGAGACCATAGCTAGGCAAGCTGATGCGATTGTTTTGGTAATGGGCCTTGACCAGACTGTAGAAGCGGAAACAAGAGATAGAGTTGGGCTTCTCTTACCGGGCCTTCAACAAGAACTTGTGACAAGGGTGGCTAGGGCCGCTAAGGGCCCAGTTATCTTGCTCATCATGTCTGGTGGCCCAGTTGATATCTCGTTTGCCAAAAATGACCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCCGGGCAAGCTGGGGGAACTGCCATTGCTGATGTAATCTTTGGTACAACTAACCCAGGAGGAAGGTTACCCATGACATGGTACCCACAAGGTTACTTGGCCAAAGTGCCCATGACAAACATGGACATGCGTCCAAACCCAACAACAGGGTACCCAGGAAGAACCTATAGATTCTACAAAGGTCCTGTAGTGTTCCCATTCGGACATGGCCTAAGTTACTCAAGATTCAGCCACAGCTTAGCACTTGCCCCCAAACAGGTCTCAGTGCCCATAATGAGCCTCCAAGCCTTGACAAACTCAACCCTCTCAAGCAAAGCAGTTAAGGTGAGCCATGCCAATTGTGATGACTCATTGGAGATGGAATTCCACGTTGATGTGAAAAACGAAGGCTCAATGGATGGGACCCACACCCTTCTCATATTCTCACAACCACCCCATGGAAAATGGTCGCAAATTAAACAATTGGTGGGCTTCCACAAGACCCATGTTCTTGCTGGCTCAAAGCAACGAGTCAAGGTTGGTGTTCATGTGTGCAAACACTTATCCGTTGTGGACCAGTTCGGGGTTCGAAGAATCCCAACCGGTGAACATGAACTCCACATTGGTGATGTCAAACATTCAATTTCTGTTCAAACTACGCATTAA 2328 0.5026 MACENDNNNKGLLLALGLVLCVTLSFFPRVTEGRVPFACDPRNGLTRGFKFCNTHVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVISTAASFNQSLWQEIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVKGLQGDSAGNHLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWRLNGYIVSDCDSVGVFFDNQHYTKTPEEAAAEAIKAGLDLDCGPFLAIHTDSAIRKGLISENDLNLALANLISVQMRLGMFDGEPSTQPYGNLGPRDVCTSAHQQLALEAARESIVLLQNKGNSLPLSPSRLRTIGVVGPNADATVTMIGNYAGVACGYTTPLQGIARYVKTAHQVGCRGVACRGNELFGAAETIARQADAIVLVMGLDQTVEAETRDRVGLLLPGLQQELVTRVARAAKGPVILLIMSGGPVDISFAKNDPKISAILWVGYPGQAGGTAIADVIFGTTNPGGRLPMTWYPQGYLAKVPMTNMDMRPNPTTGYPGRTYRFYKGPVVFPFGHGLSYSRFSHSLALAPKQVSVPIMSLQALTNSTLSSKAVKVSHANCDDSLEMEFHVDVKNEGSMDGTHTLLIFSQPPHGKWSQIKQLVGFHKTHVLAGSKQRVKVGVHVCKHLSVVDQFGVRRIPTGEHELHIGDVKHSISVQTTH* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1195 775 SMART Fn3_like_2 697 766 IPR026891 -
Gso15g1195 775 Gene3D - 390 635 IPR036881 GO:0004553|GO:0005975
Gso15g1195 775 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 404 637 IPR036881 GO:0004553|GO:0005975
Gso15g1195 775 Pfam Glycosyl hydrolase family 3 N terminal domain 116 333 IPR001764 GO:0004553|GO:0005975
Gso15g1195 775 Gene3D - 61 378 IPR036962 GO:0004553|GO:0005975
Gso15g1195 775 PANTHER SUGAR HYDROLASE-RELATED 19 774 IPR044993 GO:0009044|GO:0045493
Gso15g1195 775 Pfam Fibronectin type III-like domain 701 764 IPR026891 -
Gso15g1195 775 Gene3D Immunoglobulins 658 775 IPR013783 -
Gso15g1195 775 SUPERFAMILY (Trans)glycosidases 50 403 IPR017853 -
Gso15g1195 775 PANTHER BETA-D-XYLOSIDASE 1 19 774 - -
Gso15g1195 775 Pfam Glycosyl hydrolase family 3 C-terminal domain 404 634 IPR002772 GO:0004553|GO:0005975
Gso15g1195 775 PRINTS Glycosyl hydrolase family 3 signature 122 141 IPR001764 GO:0004553|GO:0005975
Gso15g1195 775 PRINTS Glycosyl hydrolase family 3 signature 210 226 IPR001764 GO:0004553|GO:0005975
Gso15g1195 775 PRINTS Glycosyl hydrolase family 3 signature 284 302 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1195 Gso-Chr15 11884352 11891144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1195 9 772 Glycoside Hydrolase AT5G49360 71.114 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1195 - - gmx:100805839 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1195 15 11884352 11891144 Gso9g0329 9 3182011 3188645 GST
Gso15g1195 15 11884352 11891144 Gso7g0496 7 4970123 4986436 PCT
Gso15g1195 15 11884352 11891144 Gso16g0202 16 2344220 2361160 PCT
Gso7g0496 7 4970123 4986436 Gso15g1195 15 11884352 11891144 PCT
Gso16g0202 16 2344220 2361160 Gso15g1195 15 11884352 11891144 PCT