Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0385 ATGTCAGTAACACGTGTTTCCTGGTTTACTGAATTTTTACCCAAGGCAATCATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATGAGATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGATGACACAGAGGGACGATGTCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGATGAAGAACCAGAAAGCAAAGTCAAAATCTTCTGAAGCACGGAAGCAACTCAGTAGTGTGCGAGTAATTCAGCGGAACCTGGTTTACATAGTGGGATTGCCTCTCAATCTGGCAGACGAAGATCTCCTCCAGCAGCGAGAATATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACCACAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAAGAAGAAGAAGCAATTCGATGCATTCAAAATGTGCATGGATTCGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACTAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTCTATATCTGCATGGGATTGGCTCTCATGAGGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGTCGTGTTCAACAAATTACTGGTGCTGCATACAATATGCAACGGCAATCAGGGAATGTATTGCCTCCTCCATTGGATGATTGCACGGATAATTCATCAGGAAAATCAATTGTGAAAAATTCATCAAGTACCTCTGTTAGCATTGTAAGAGGTTCACCTCCTAATGGAACTTCTGGGAGACCTATAGCTCTTTCTGCAGCTGCAGCATGGGGTATACGGGCTACAAATTGTCAGCCAGCTGCTTGTGGTTTATTATGTCCAAATGGACTGTCCAAGCTTAAACCTGATACAATCAGCAGCACCCTACCCTTTTCCTCTGCTGTTGCATGCACTATTCAGGCTTCATTAAATAGTGATGTTACAAAGAGGCCACTGTCGAGTGATGGGAGTCATAGTATGACACCTCAAGTAAAAAATGAATTATTGAAACCTGTTAAACAAAATAGAAGCATGGATATCCTGGATAGTGCTGAAGAAAGAACTTTGGCTTCTGAAGTTTCTCTTTCACCCATGAAATTGAACAATCAGGTGTCTTCTCTACCATTAGCCGGATATAGTGATAGAGGCAGCTTTACTGCAACAAACACAACTAATTCTATTGACATCACTCGACAACCAAGCAGCATTGGTCCTGAGGAAGCAGTTATTTCTACCAGTGAAGAGATTGAGAATTTTCCCCAGGAGTTGTCTTCTGTTCACATTGATAGAAATTCCCAAAATAAACAACATTACAGCCTATCCAAAACTAGCAGATCACCTGATAATGTGTTGGTTAAATCTATGCAATCTCAAGAATCACAGTATAATACTGACAAATTTAAAGATGTACTAATTAAAAATGCAGACAGTAAAGCTGCTGCATTAGAAAATGAGGTTTGTAATTTAAAGCAACAATGTGATTTGTCATTGGATTCTCAATCTCAATCTCAAGTAGTATCAGCTAATATTGAAGTGGAAGATGATGTAACAACTTTTGATAATCAGATACTTAAGGATCCAGAAGTTGTTGGTTCTTATTTGCCCGAATCGGCCAGTTTCCTTAATGTCTCAAATCATTCTAGTCCTCATCTTCTGCAGTGTGGTGAACCATGTAATGTTGTAAATGCTGGTTCTTTAGATGCCAATGATAAAATCAAGGATAACTCATTATTACATGCACATAACTTTTGCAATGAATATTCTGATAAATTGATCAGCACCAGCTCTTATGGGTTCCTCCATGATGCAAGAAATGAGCAACGCATTGGAAGATTAGTTAGTGATGCAGTTAATATTGGAAGTGACGCCGCTATGGACAAGGGTGAAAGCAGTATAATTTCAAATATATTATCCATGGAGTCTGATGCCTGGGATGACTCGCTAACATCACATGAGAGTTTGGCCAAGTTGTTGGGTGACAACACTGACAACCAGAATGGTCCTTTAAAAAAATCTAGTTCTTGGAAAGTTCAAAGTAACAATCAATCTAGATTTTCTTTTGCAAGACAGGAGGAATCCAAATTCCAAGCTAATGTACATCCATCTTCTGGTGCCAACCAGCAATTTCCAAAGAATGGTTCACTCATCCAGGATTTTGTGGAAAGAGACTTTTCTTTGGACAAGCTGGGTTTTGCAAATGGCATCCCCTCCAATAACCTCGAGGAATCTGGAAATCTTGGTAGTGGCCATTTTATTGCTTCAAACAATAAACTTTCAGCTGTTTCAAGAGCACAAATTTCAGCACCACCAGGATTTTCTGTTCCGAACAGGGCACCACCTCCTGGTTTTTCTTCCCTTGAGAGAATGGGGCAGGCTTTTGACTCCCTCTCTGGGAATTCATTGCTCGACCCTTCTTTCTTACTGAGAAATTCATATCAAACACCCTCAAATGGAAATATTGGTGATCCAGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGTTAAAGGGAGAATTCAAGGTGCACAAAACAGCCCAGTGCTGGATATGCGATCCAATTACCCTGAACAGTTAAATTACTTTGAAAATGAGGCTAGAGTTCAATTATTGATGCAAAGATCTCTCTCACCACATCAAAACCTTCGATTTTCTGAAATTGGGAATTCCTTTTCTCAGTTTGGTGATTCTTATGGCATTTCTTCAAGGTTAAATCAATCACAAGTTAGTAATCTGGCTTCATTTCCTCAGTTGTCTCTGCAGCAGCCTAGAAATGCAATCTTGTCAAATGGCCAATTGGATGGGTGGAATGAAGTGCCGAGTGGAAATGGTCTGGGTGTGGCAGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGATTCAAAATATCGAATGCCGAATTCTATGGATCTGTTCAACAGGGCATTTGGGATTTGA 3138 0.3987 MSVTRVSWFTEFLPKAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMEKKMKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHGIGSHEDSFTKDEIISAYTSRVQQITGAAYNMQRQSGNVLPPPLDDCTDNSSGKSIVKNSSSTSVSIVRGSPPNGTSGRPIALSAAAAWGIRATNCQPAACGLLCPNGLSKLKPDTISSTLPFSSAVACTIQASLNSDVTKRPLSSDGSHSMTPQVKNELLKPVKQNRSMDILDSAEERTLASEVSLSPMKLNNQVSSLPLAGYSDRGSFTATNTTNSIDITRQPSSIGPEEAVISTSEEIENFPQELSSVHIDRNSQNKQHYSLSKTSRSPDNVLVKSMQSQESQYNTDKFKDVLIKNADSKAAALENEVCNLKQQCDLSLDSQSQSQVVSANIEVEDDVTTFDNQILKDPEVVGSYLPESASFLNVSNHSSPHLLQCGEPCNVVNAGSLDANDKIKDNSLLHAHNFCNEYSDKLISTSSYGFLHDARNEQRIGRLVSDAVNIGSDAAMDKGESSIISNILSMESDAWDDSLTSHESLAKLLGDNTDNQNGPLKKSSSWKVQSNNQSRFSFARQEESKFQANVHPSSGANQQFPKNGSLIQDFVERDFSLDKLGFANGIPSNNLEESGNLGSGHFIASNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSLERMGQAFDSLSGNSLLDPSFLLRNSYQTPSNGNIGDPGDIEFMDPAILAVVKGRIQGAQNSPVLDMRSNYPEQLNYFENEARVQLLMQRSLSPHQNLRFSEIGNSFSQFGDSYGISSRLNQSQVSNLASFPQLSLQQPRNAILSNGQLDGWNEVPSGNGLGVAELLRNERLGFNKFYRGYDDSKYRMPNSMDLFNRAFGI* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0385 1045 SMART rrm1_1 128 209 IPR000504 GO:0003723
Gso15g0385 1045 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 213 IPR000504 GO:0003723
Gso15g0385 1045 ProSiteProfiles Zinc finger RING-type profile. 26 74 IPR001841 -
Gso15g0385 1045 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 12 1045 IPR039780 GO:0004842|GO:0030014
Gso15g0385 1045 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 12 1045 - -
Gso15g0385 1045 CDD RRM_CNOT4 122 221 IPR034261 -
Gso15g0385 1045 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 207 IPR000504 GO:0003723
Gso15g0385 1045 CDD mRING-HC-C4C4_CNOT4 26 75 IPR039515 -
Gso15g0385 1045 SUPERFAMILY RING/U-box 16 83 - -
Gso15g0385 1045 Gene3D - 128 209 IPR012677 -
Gso15g0385 1045 SMART rrm2_1 128 209 IPR003954 GO:0003676
Gso15g0385 1045 Pfam RING/Ubox like zinc-binding domain 26 78 - -
Gso15g0385 1045 SUPERFAMILY RNA-binding domain, RBD 121 207 IPR035979 GO:0003676
Gso15g0385 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 94 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0385 Gso-Chr15 3532943 3543806 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0385 K10643 - gmx:100796804 2034.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0385 15 3532943 3543806 Gso11g3416 11 50067817 50079379 GST
Gso15g0385 15 3532943 3543806 Gso12g0601 12 5445300 5453029 PCT
Gso15g0385 15 3532943 3543806 Gso11g1242 11 11391791 11399442 PCT
Gso12g0601 12 5445300 5453029 Gso15g0385 15 3532943 3543806 PCT