Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0601 ATGAGTGACGAAGGAGAAAGAACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGCAAATGCGGTTATGAGATCTGTGTCTGGTGCTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCTGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGACGGCTGCAAACTGTGAGAGATTGGTGAATGGAATTAATATGGAGAAAAAGATGAAGACTCAGAAAGCGAAGTCTAAATCATCTGATGGGCGCAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATCTTGCAGATGAAGATCTTCTTCAGCGGAGAGAGTATTTTGCTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACAGCAGCTGGTGTAATTCAACAGTTTCCGAATGATACTTGTAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCGGTTTGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCGGATTGTCTATATTTGCATGAGATTGGCTCCCAAGAAGATAGTTTTACCAAGGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAACAAATCACTGGTGCCACAAACAATATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCACTGGATGATAATATGAATAGTTCATCTGTAAAGCCTATTGTTAAAAATTCTTCTTGTAACTTTGTTAACATTGTAAGAGGTTCACCTCCAAATGGAATATATGGGAAAAATATGGCCCTTCCTGCTAGTGCTGCATGGGGTACTCAGGCCTCAAATTGTCAGCCCCCTGCTGGAGGTCTATCATATCCAAATGGGCCATCCAAGCCGAAACCTGATACAGGCTGCAGCACACTAGCATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGGCCACCATCAAGTGATGGGTGCCATAGTATGACACCTACAGTGAAAAGTGAATTGTTGAAACCTGTTAAACAATATAACAATAGCGTGGGCAGTCTGGTTAGTGCAGGAGAAAAAACTTCAGCTTCTGATGTTTCTCCTGTGCTCGTGAATTTGAACAGCCAGTTGTCTTCTCTACCGTTGTCCCGAGATAGTGATGGCAATTGTACTACAGCAAACACAATATATTCTACTAACATGACTGGACAGTCTTGTAACTCTGGTCCTGAGGAAGCAATGACTGCTACCAATGAAGAGATTCAGAATTTGTCCAATGAGTTGTCCTCAATTAACATTGATAGAAATGCCGAACATTGCGGTATAACCAAACCTAATAGCCCGCCTACTGATCATGCATTGGTTAAATCCCCTCAAATTCAAGGATCAAAATATAATGTTGACAGATTTAGAGATGTGATAACTACAAATGTGACTGGTAAAGCTACCTTGAATAATGTGGCCTGTAATTCTAGGGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTATCAGATACTGCTGAAATTGATGATGATGTGACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGCCGTTCTTATTTGCCAAAGTCAACCAGTTTCCTTCATGCATCAAACCATTCTAGCCCTTGTCTTCTGCAGCATGGGGAACTTTGTACTGCCATAAATGCAGGTTCTGTATCTGCTGATGATAGAGTTCAAAATGAATCTATGTTACATGCATCCAATATATTATGTAATGGCCACCCGGAAAAATTGGTCAGCAGCAGCTCCTATGGTCTGCTTCACGATGAAAGAAATGGGCATATCATTCAAAGATTAGTCGGTGATGATGTTAATTTTGGGCATGATGTTGCTAGGGATAAGGGTGAAAGTAGTATAATTTCAAATATATTGTCCATGAATTTTGATACCTGGGATGACTCACTAACATCACCTCATAATTTAGCTAAGTTGTTGGGTGACAATACTGATAACCGGTCTGGTCCTTTAAACAAATCTAGTTCTTGGAAAGGTAATGGTAACAATCAATCAAGGTTCTCTTTTGCGAGGCAAGAGGAATCCAAAATCCAAATGTTTGATGCACATGCATCTTATGGTGTCAGCCATCAACGGCCAAACCATACAGTCTTCCAGAATTTTGCAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCAAATGGATTTTCTACCGGTAACTTTGAGGAAGCTGATAATTTGGTCAGTGGTCATCCCATTGCATCTTCTAATAAGTTTTCTGCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCAGGCTGCCACCACCTGGGTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTTTGACTCCATTTCTGTCCTTTTGACAGGGAATTCTTTGCTTGACCATTCTTCCCTATTGAGAAATTCATATCAGACACCTTCAGCTGGAAACCTTGGTAGTGCAGGGGACATTGAATTTATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCGGCACTGGACATTCGATCTAATTTCATGCCACAATTAAATTACTTCGAAAATGATGCCAGACTACAATTATTGATGCAAAGATCTCTCGCACCACAGCAAAACCTTAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGCGATTCCTATGCTGTTTCTTCAAGGTTAGATCAATCCCAAGTCAGTAATCTAGGCCCATTCCAACAGCTATCTCTGCAGCAGTCTACAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAATGGTTTGGGTGTGGCTGAGCTTTTGAGAAATGAAAGACTTGGATTCAATAAATTTTATTCAGGATATGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTTGGGATGTGA 3081 0.4135 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGTAANCERLVNGINMEKKMKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAVCCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPPPLDDNMNSSSVKPIVKNSSCNFVNIVRGSPPNGIYGKNMALPASAAWGTQASNCQPPAGGLSYPNGPSKPKPDTGCSTLAFSAAVTGSIQASDVTKRPPSSDGCHSMTPTVKSELLKPVKQYNNSVGSLVSAGEKTSASDVSPVLVNLNSQLSSLPLSRDSDGNCTTANTIYSTNMTGQSCNSGPEEAMTATNEEIQNLSNELSSINIDRNAEHCGITKPNSPPTDHALVKSPQIQGSKYNVDRFRDVITTNVTGKATLNNVACNSREQCDWKLDSQSLVSDTAEIDDDVTSFDNQRLKDPEVVCRSYLPKSTSFLHASNHSSPCLLQHGELCTAINAGSVSADDRVQNESMLHASNILCNGHPEKLVSSSSYGLLHDERNGHIIQRLVGDDVNFGHDVARDKGESSIISNILSMNFDTWDDSLTSPHNLAKLLGDNTDNRSGPLNKSSSWKGNGNNQSRFSFARQEESKIQMFDAHASYGVSHQRPNHTVFQNFAERDLYMDKLGIANGFSTGNFEEADNLVSGHPIASSNKFSAISRAQVSAPPGFSIPSRLPPPGFSSHERVEQAFDSISVLLTGNSLLDHSSLLRNSYQTPSAGNLGSAGDIEFMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLAPQQNLRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSLQQSTNAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0601 1026 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Gso12g0601 1026 Gene3D - 111 192 IPR012677 -
Gso12g0601 1026 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Gso12g0601 1026 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1026 - -
Gso12g0601 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Gso12g0601 1026 CDD RRM_CNOT4 105 204 IPR034261 -
Gso12g0601 1026 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Gso12g0601 1026 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1026 IPR039780 GO:0004842|GO:0030014
Gso12g0601 1026 Coils Coil 449 469 - -
Gso12g0601 1026 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Gso12g0601 1026 MobiDBLite consensus disorder prediction 695 717 - -
Gso12g0601 1026 SUPERFAMILY RING/U-box 3 66 - -
Gso12g0601 1026 MobiDBLite consensus disorder prediction 350 368 - -
Gso12g0601 1026 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Gso12g0601 1026 SMART rrm2_1 111 192 IPR003954 GO:0003676
Gso12g0601 1026 MobiDBLite consensus disorder prediction 350 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0601 Gso-Chr12 5445300 5453029 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0601 K10643 - gmx:100801880 2058.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0601 12 5445300 5453029 Gso11g1242 11 11391791 11399442 GST
Gso15g0385 15 3532943 3543806 Gso12g0601 12 5445300 5453029 PCT
Gso11g3416 11 50067817 50079379 Gso12g0601 12 5445300 5453029 PCT
Gso12g0601 12 5445300 5453029 Gso15g0385 15 3532943 3543806 PCT
Gso12g0601 12 5445300 5453029 Gso11g3416 11 50067817 50079379 PCT